Magnesium in PDB 7vrj: Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
Other elements in 7vrj:
The structure of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
37;
Binding sites:
The binding sites of Magnesium atom in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
(pdb code 7vrj). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 37 binding sites of Magnesium where determined in the
Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum, PDB code: 7vrj:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 1 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg505
b:16.4
occ:1.00
|
O
|
C:HOH606
|
2.1
|
13.5
|
1.0
|
|
O
|
M:HOH507
|
2.1
|
11.0
|
1.0
|
|
O
|
C:HOH602
|
2.1
|
15.8
|
1.0
|
|
OE1
|
C:GLN185
|
2.6
|
16.7
|
1.0
|
|
CD
|
C:GLN185
|
3.3
|
16.7
|
1.0
|
|
NE2
|
C:GLN185
|
3.5
|
16.7
|
1.0
|
|
OE2
|
C:GLU232
|
3.5
|
13.2
|
1.0
|
|
CD
|
C:GLU232
|
4.0
|
13.2
|
1.0
|
|
O
|
C:HOH618
|
4.1
|
15.3
|
1.0
|
|
ND2
|
C:ASN186
|
4.1
|
16.2
|
1.0
|
|
OE1
|
C:GLU232
|
4.1
|
13.2
|
1.0
|
|
OE1
|
M:GLU95
|
4.3
|
16.1
|
1.0
|
|
CG
|
M:PRO175
|
4.5
|
11.5
|
1.0
|
|
CG
|
C:GLN185
|
4.5
|
16.7
|
1.0
|
|
O
|
C:ALA196
|
4.6
|
13.7
|
1.0
|
|
O
|
M:PRO180
|
4.7
|
9.6
|
1.0
|
|
CG
|
C:ASN186
|
5.0
|
16.2
|
1.0
|
|
OD1
|
C:ASN186
|
5.0
|
16.2
|
1.0
|
|
CB
|
M:PRO180
|
5.0
|
9.6
|
1.0
|
|
Magnesium binding site 2 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 2 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg502
b:8.3
occ:1.00
|
MG
|
L:BCL502
|
0.0
|
8.3
|
1.0
|
|
NC
|
L:BCL502
|
2.0
|
8.3
|
1.0
|
|
NA
|
L:BCL502
|
2.0
|
8.3
|
1.0
|
|
ND
|
L:BCL502
|
2.0
|
8.3
|
1.0
|
|
NB
|
L:BCL502
|
2.1
|
8.3
|
1.0
|
|
NE2
|
L:HIS178
|
2.4
|
7.0
|
1.0
|
|
C4D
|
L:BCL502
|
3.0
|
8.3
|
1.0
|
|
C4A
|
L:BCL502
|
3.0
|
8.3
|
1.0
|
|
C4C
|
L:BCL502
|
3.0
|
8.3
|
1.0
|
|
C1A
|
L:BCL502
|
3.0
|
8.3
|
1.0
|
|
C1C
|
L:BCL502
|
3.0
|
8.3
|
1.0
|
|
C1B
|
L:BCL502
|
3.1
|
8.3
|
1.0
|
|
C4B
|
L:BCL502
|
3.1
|
8.3
|
1.0
|
|
CE1
|
L:HIS178
|
3.2
|
7.0
|
1.0
|
|
C1D
|
L:BCL502
|
3.2
|
8.3
|
1.0
|
|
CHB
|
L:BCL502
|
3.4
|
8.3
|
1.0
|
|
CHC
|
L:BCL502
|
3.4
|
8.3
|
1.0
|
|
CHA
|
L:BCL502
|
3.4
|
8.3
|
1.0
|
|
CHD
|
L:BCL502
|
3.5
|
8.3
|
1.0
|
|
CD2
|
L:HIS178
|
3.6
|
7.0
|
1.0
|
|
CBB
|
M:BCL402
|
3.8
|
7.7
|
1.0
|
|
CAB
|
M:BCL402
|
3.8
|
7.7
|
1.0
|
|
OBB
|
M:BCL402
|
3.8
|
7.7
|
1.0
|
|
C3D
|
L:BCL502
|
4.2
|
8.3
|
1.0
|
|
C3A
|
L:BCL502
|
4.3
|
8.3
|
1.0
|
|
C3C
|
L:BCL502
|
4.3
|
8.3
|
1.0
|
|
C2A
|
L:BCL502
|
4.3
|
8.3
|
1.0
|
|
C2C
|
L:BCL502
|
4.3
|
8.3
|
1.0
|
|
ND1
|
L:HIS178
|
4.4
|
7.0
|
1.0
|
|
C3B
|
L:BCL502
|
4.4
|
8.3
|
1.0
|
|
C2B
|
L:BCL502
|
4.4
|
8.3
|
1.0
|
|
C2D
|
L:BCL502
|
4.4
|
8.3
|
1.0
|
|
C3B
|
M:BCL402
|
4.6
|
7.7
|
1.0
|
|
CG
|
L:HIS178
|
4.6
|
7.0
|
1.0
|
|
CD2
|
L:PHE172
|
4.8
|
6.2
|
1.0
|
|
CMA
|
L:BCL502
|
4.9
|
8.3
|
1.0
|
|
CBD
|
L:BCL502
|
4.9
|
8.3
|
1.0
|
|
CE2
|
L:PHE172
|
4.9
|
6.2
|
1.0
|
|
Magnesium binding site 3 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 3 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg508
b:9.8
occ:1.00
|
MG
|
L:BCL508
|
0.0
|
9.8
|
1.0
|
|
NA
|
L:BCL508
|
2.0
|
9.8
|
1.0
|
|
NC
|
L:BCL508
|
2.0
|
9.8
|
1.0
|
|
ND
|
L:BCL508
|
2.0
|
9.8
|
1.0
|
|
NB
|
L:BCL508
|
2.0
|
9.8
|
1.0
|
|
NE2
|
L:HIS158
|
2.6
|
9.1
|
1.0
|
|
C4D
|
L:BCL508
|
2.9
|
9.8
|
1.0
|
|
C1A
|
L:BCL508
|
3.0
|
9.8
|
1.0
|
|
C4A
|
L:BCL508
|
3.0
|
9.8
|
1.0
|
|
C4C
|
L:BCL508
|
3.0
|
9.8
|
1.0
|
|
C1C
|
L:BCL508
|
3.0
|
9.8
|
1.0
|
|
C1B
|
L:BCL508
|
3.1
|
9.8
|
1.0
|
|
C4B
|
L:BCL508
|
3.1
|
9.8
|
1.0
|
|
C1D
|
L:BCL508
|
3.2
|
9.8
|
1.0
|
|
CHB
|
L:BCL508
|
3.4
|
9.8
|
1.0
|
|
CHC
|
L:BCL508
|
3.4
|
9.8
|
1.0
|
|
CHA
|
L:BCL508
|
3.4
|
9.8
|
1.0
|
|
CD2
|
L:HIS158
|
3.5
|
9.1
|
1.0
|
|
CHD
|
L:BCL508
|
3.5
|
9.8
|
1.0
|
|
CE1
|
L:HIS158
|
3.7
|
9.1
|
1.0
|
|
C3D
|
L:BCL508
|
4.2
|
9.8
|
1.0
|
|
C3A
|
L:BCL508
|
4.3
|
9.8
|
1.0
|
|
C2A
|
L:BCL508
|
4.3
|
9.8
|
1.0
|
|
C3C
|
L:BCL508
|
4.3
|
9.8
|
1.0
|
|
C2C
|
L:BCL508
|
4.3
|
9.8
|
1.0
|
|
C3B
|
L:BCL508
|
4.4
|
9.8
|
1.0
|
|
C2B
|
L:BCL508
|
4.4
|
9.8
|
1.0
|
|
C2D
|
L:BCL508
|
4.4
|
9.8
|
1.0
|
|
CBA
|
L:BCL508
|
4.7
|
9.8
|
1.0
|
|
CG
|
L:HIS158
|
4.7
|
9.1
|
1.0
|
|
ND1
|
L:HIS158
|
4.7
|
9.1
|
1.0
|
|
OBB
|
L:BPH503
|
4.8
|
12.1
|
1.0
|
|
C20
|
L:BPH503
|
4.8
|
12.1
|
1.0
|
|
CE2
|
M:TYR209
|
4.9
|
9.3
|
1.0
|
|
CBD
|
L:BCL508
|
4.9
|
9.8
|
1.0
|
|
CBC
|
L:BCL508
|
5.0
|
9.8
|
1.0
|
|
Magnesium binding site 4 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 4 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg509
b:10.9
occ:1.00
|
MG
|
L:BCL509
|
0.0
|
10.9
|
1.0
|
|
NA
|
L:BCL509
|
2.0
|
10.9
|
1.0
|
|
NC
|
L:BCL509
|
2.0
|
10.9
|
1.0
|
|
ND
|
L:BCL509
|
2.0
|
10.9
|
1.0
|
|
NB
|
L:BCL509
|
2.0
|
10.9
|
1.0
|
|
NE2
|
M:HIS181
|
2.7
|
8.8
|
1.0
|
|
C4D
|
L:BCL509
|
2.9
|
10.9
|
1.0
|
|
C4A
|
L:BCL509
|
3.0
|
10.9
|
1.0
|
|
C1A
|
L:BCL509
|
3.0
|
10.9
|
1.0
|
|
C4C
|
L:BCL509
|
3.0
|
10.9
|
1.0
|
|
C1C
|
L:BCL509
|
3.0
|
10.9
|
1.0
|
|
C1B
|
L:BCL509
|
3.0
|
10.9
|
1.0
|
|
C4B
|
L:BCL509
|
3.1
|
10.9
|
1.0
|
|
C1D
|
L:BCL509
|
3.2
|
10.9
|
1.0
|
|
CHB
|
L:BCL509
|
3.3
|
10.9
|
1.0
|
|
CHC
|
L:BCL509
|
3.4
|
10.9
|
1.0
|
|
CHA
|
L:BCL509
|
3.4
|
10.9
|
1.0
|
|
CD2
|
M:HIS181
|
3.4
|
8.8
|
1.0
|
|
CHD
|
L:BCL509
|
3.5
|
10.9
|
1.0
|
|
CE1
|
M:HIS181
|
3.8
|
8.8
|
1.0
|
|
C3D
|
L:BCL509
|
4.2
|
10.9
|
1.0
|
|
C3C
|
L:BCL509
|
4.3
|
10.9
|
1.0
|
|
C3A
|
L:BCL509
|
4.3
|
10.9
|
1.0
|
|
C2A
|
L:BCL509
|
4.3
|
10.9
|
1.0
|
|
C2C
|
L:BCL509
|
4.3
|
10.9
|
1.0
|
|
C2B
|
L:BCL509
|
4.4
|
10.9
|
1.0
|
|
C3B
|
L:BCL509
|
4.4
|
10.9
|
1.0
|
|
C2D
|
L:BCL509
|
4.4
|
10.9
|
1.0
|
|
OBB
|
M:BPH403
|
4.7
|
15.9
|
1.0
|
|
CG
|
M:HIS181
|
4.7
|
8.8
|
1.0
|
|
ND1
|
M:HIS181
|
4.9
|
8.8
|
1.0
|
|
CBD
|
L:BCL509
|
4.9
|
10.9
|
1.0
|
|
CBA
|
L:BCL509
|
4.9
|
10.9
|
1.0
|
|
Magnesium binding site 5 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 5 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg402
b:7.7
occ:1.00
|
MG
|
M:BCL402
|
0.0
|
7.7
|
1.0
|
|
NC
|
M:BCL402
|
2.0
|
7.7
|
1.0
|
|
NA
|
M:BCL402
|
2.0
|
7.7
|
1.0
|
|
ND
|
M:BCL402
|
2.0
|
7.7
|
1.0
|
|
NB
|
M:BCL402
|
2.0
|
7.7
|
1.0
|
|
NE2
|
M:HIS201
|
2.5
|
8.3
|
1.0
|
|
C4D
|
M:BCL402
|
2.9
|
7.7
|
1.0
|
|
C4A
|
M:BCL402
|
3.0
|
7.7
|
1.0
|
|
C1A
|
M:BCL402
|
3.0
|
7.7
|
1.0
|
|
C4C
|
M:BCL402
|
3.0
|
7.7
|
1.0
|
|
C1C
|
M:BCL402
|
3.0
|
7.7
|
1.0
|
|
C1B
|
M:BCL402
|
3.0
|
7.7
|
1.0
|
|
C4B
|
M:BCL402
|
3.1
|
7.7
|
1.0
|
|
C1D
|
M:BCL402
|
3.2
|
7.7
|
1.0
|
|
CE1
|
M:HIS201
|
3.3
|
8.3
|
1.0
|
|
CHB
|
M:BCL402
|
3.3
|
7.7
|
1.0
|
|
CHC
|
M:BCL402
|
3.4
|
7.7
|
1.0
|
|
CHA
|
M:BCL402
|
3.4
|
7.7
|
1.0
|
|
CBB
|
L:BCL502
|
3.4
|
8.3
|
1.0
|
|
CHD
|
M:BCL402
|
3.5
|
7.7
|
1.0
|
|
CD2
|
M:HIS201
|
3.6
|
8.3
|
1.0
|
|
CAB
|
L:BCL502
|
3.8
|
8.3
|
1.0
|
|
OBB
|
L:BCL502
|
4.2
|
8.3
|
1.0
|
|
C3D
|
M:BCL402
|
4.2
|
7.7
|
1.0
|
|
C2A
|
M:BCL402
|
4.3
|
7.7
|
1.0
|
|
C3A
|
M:BCL402
|
4.3
|
7.7
|
1.0
|
|
C3C
|
M:BCL402
|
4.3
|
7.7
|
1.0
|
|
C2C
|
M:BCL402
|
4.3
|
7.7
|
1.0
|
|
C3B
|
M:BCL402
|
4.4
|
7.7
|
1.0
|
|
C2B
|
M:BCL402
|
4.4
|
7.7
|
1.0
|
|
C2D
|
M:BCL402
|
4.4
|
7.7
|
1.0
|
|
ND1
|
M:HIS201
|
4.5
|
8.3
|
1.0
|
|
C3B
|
L:BCL502
|
4.6
|
8.3
|
1.0
|
|
CG
|
M:HIS201
|
4.7
|
8.3
|
1.0
|
|
CBD
|
M:BCL402
|
4.9
|
7.7
|
1.0
|
|
CD1
|
M:ILE205
|
5.0
|
8.3
|
1.0
|
|
Magnesium binding site 6 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 6 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:33.3
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
33.3
|
1.0
|
|
NA
|
A:BCL101
|
2.0
|
33.3
|
1.0
|
|
NC
|
A:BCL101
|
2.0
|
33.3
|
1.0
|
|
ND
|
A:BCL101
|
2.0
|
33.3
|
1.0
|
|
NB
|
A:BCL101
|
2.0
|
33.3
|
1.0
|
|
NE2
|
A:HIS33
|
2.5
|
24.3
|
1.0
|
|
C4D
|
A:BCL101
|
2.9
|
33.3
|
1.0
|
|
C4A
|
A:BCL101
|
3.0
|
33.3
|
1.0
|
|
C1A
|
A:BCL101
|
3.0
|
33.3
|
1.0
|
|
C4C
|
A:BCL101
|
3.0
|
33.3
|
1.0
|
|
C1C
|
A:BCL101
|
3.0
|
33.3
|
1.0
|
|
C1B
|
A:BCL101
|
3.1
|
33.3
|
1.0
|
|
C4B
|
A:BCL101
|
3.1
|
33.3
|
1.0
|
|
C1D
|
A:BCL101
|
3.2
|
33.3
|
1.0
|
|
CE1
|
A:HIS33
|
3.2
|
24.3
|
1.0
|
|
CHB
|
A:BCL101
|
3.4
|
33.3
|
1.0
|
|
CHC
|
A:BCL101
|
3.4
|
33.3
|
1.0
|
|
CHA
|
A:BCL101
|
3.4
|
33.3
|
1.0
|
|
CHD
|
A:BCL101
|
3.5
|
33.3
|
1.0
|
|
CD2
|
A:HIS33
|
3.7
|
24.3
|
1.0
|
|
C3D
|
A:BCL101
|
4.2
|
33.3
|
1.0
|
|
C12
|
B:LMT101
|
4.2
|
42.4
|
1.0
|
|
CBB
|
0:BCL102
|
4.2
|
32.2
|
1.0
|
|
C2A
|
A:BCL101
|
4.3
|
33.3
|
1.0
|
|
C3A
|
A:BCL101
|
4.3
|
33.3
|
1.0
|
|
C3C
|
A:BCL101
|
4.3
|
33.3
|
1.0
|
|
C2C
|
A:BCL101
|
4.3
|
33.3
|
1.0
|
|
C11
|
B:LMT101
|
4.3
|
42.4
|
1.0
|
|
C3B
|
A:BCL101
|
4.4
|
33.3
|
1.0
|
|
C2B
|
A:BCL101
|
4.4
|
33.3
|
1.0
|
|
C2D
|
A:BCL101
|
4.4
|
33.3
|
1.0
|
|
ND1
|
A:HIS33
|
4.4
|
24.3
|
1.0
|
|
CMD
|
B:BCL102
|
4.5
|
34.0
|
1.0
|
|
CG
|
A:HIS33
|
4.7
|
24.3
|
1.0
|
|
CBD
|
A:BCL101
|
4.9
|
33.3
|
1.0
|
|
CMB
|
0:BCL102
|
4.9
|
32.2
|
1.0
|
|
Magnesium binding site 7 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 7 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg102
b:34.0
occ:1.00
|
MG
|
B:BCL102
|
0.0
|
34.0
|
1.0
|
|
NC
|
B:BCL102
|
2.0
|
34.0
|
1.0
|
|
NA
|
B:BCL102
|
2.0
|
34.0
|
1.0
|
|
ND
|
B:BCL102
|
2.0
|
34.0
|
1.0
|
|
NB
|
B:BCL102
|
2.0
|
34.0
|
1.0
|
|
NE2
|
B:HIS37
|
2.4
|
31.0
|
1.0
|
|
C4D
|
B:BCL102
|
2.9
|
34.0
|
1.0
|
|
C4A
|
B:BCL102
|
3.0
|
34.0
|
1.0
|
|
C4C
|
B:BCL102
|
3.0
|
34.0
|
1.0
|
|
C1A
|
B:BCL102
|
3.0
|
34.0
|
1.0
|
|
C1C
|
B:BCL102
|
3.0
|
34.0
|
1.0
|
|
C1B
|
B:BCL102
|
3.0
|
34.0
|
1.0
|
|
C4B
|
B:BCL102
|
3.1
|
34.0
|
1.0
|
|
C1D
|
B:BCL102
|
3.2
|
34.0
|
1.0
|
|
CE1
|
B:HIS37
|
3.2
|
31.0
|
1.0
|
|
CHB
|
B:BCL102
|
3.3
|
34.0
|
1.0
|
|
CHC
|
B:BCL102
|
3.4
|
34.0
|
1.0
|
|
CHA
|
B:BCL102
|
3.4
|
34.0
|
1.0
|
|
CHD
|
B:BCL102
|
3.5
|
34.0
|
1.0
|
|
CD2
|
B:HIS37
|
3.6
|
31.0
|
1.0
|
|
CMB
|
D:BCL103
|
3.9
|
34.5
|
1.0
|
|
C3D
|
B:BCL102
|
4.2
|
34.0
|
1.0
|
|
C3C
|
B:BCL102
|
4.3
|
34.0
|
1.0
|
|
C2C
|
B:BCL102
|
4.3
|
34.0
|
1.0
|
|
C3A
|
B:BCL102
|
4.3
|
34.0
|
1.0
|
|
C2A
|
B:BCL102
|
4.3
|
34.0
|
1.0
|
|
C3B
|
B:BCL102
|
4.4
|
34.0
|
1.0
|
|
ND1
|
B:HIS37
|
4.4
|
31.0
|
1.0
|
|
C2B
|
B:BCL102
|
4.4
|
34.0
|
1.0
|
|
C2D
|
B:BCL102
|
4.4
|
34.0
|
1.0
|
|
CG
|
B:HIS37
|
4.6
|
31.0
|
1.0
|
|
CBB
|
D:BCL103
|
4.8
|
34.5
|
1.0
|
|
C2B
|
D:BCL103
|
4.8
|
34.5
|
1.0
|
|
CD1
|
A:ILE32
|
4.9
|
25.0
|
1.0
|
|
CBD
|
B:BCL102
|
4.9
|
34.0
|
1.0
|
|
Magnesium binding site 8 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 8 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg103
b:34.5
occ:1.00
|
MG
|
D:BCL103
|
0.0
|
34.5
|
1.0
|
|
NA
|
D:BCL103
|
2.0
|
34.5
|
1.0
|
|
NC
|
D:BCL103
|
2.0
|
34.5
|
1.0
|
|
ND
|
D:BCL103
|
2.0
|
34.5
|
1.0
|
|
NB
|
D:BCL103
|
2.0
|
34.5
|
1.0
|
|
NE2
|
D:HIS33
|
2.5
|
29.4
|
1.0
|
|
C4D
|
D:BCL103
|
2.9
|
34.5
|
1.0
|
|
C1A
|
D:BCL103
|
3.0
|
34.5
|
1.0
|
|
C4A
|
D:BCL103
|
3.0
|
34.5
|
1.0
|
|
C4C
|
D:BCL103
|
3.0
|
34.5
|
1.0
|
|
C1C
|
D:BCL103
|
3.0
|
34.5
|
1.0
|
|
C1B
|
D:BCL103
|
3.1
|
34.5
|
1.0
|
|
C4B
|
D:BCL103
|
3.1
|
34.5
|
1.0
|
|
C1D
|
D:BCL103
|
3.2
|
34.5
|
1.0
|
|
CE1
|
D:HIS33
|
3.3
|
29.4
|
1.0
|
|
CHB
|
D:BCL103
|
3.4
|
34.5
|
1.0
|
|
CHC
|
D:BCL103
|
3.4
|
34.5
|
1.0
|
|
CHA
|
D:BCL103
|
3.4
|
34.5
|
1.0
|
|
CHD
|
D:BCL103
|
3.5
|
34.5
|
1.0
|
|
CD2
|
D:HIS33
|
3.5
|
29.4
|
1.0
|
|
CBB
|
B:BCL102
|
4.1
|
34.0
|
1.0
|
|
C3D
|
D:BCL103
|
4.2
|
34.5
|
1.0
|
|
CMD
|
E:BCL102
|
4.3
|
34.8
|
1.0
|
|
C2A
|
D:BCL103
|
4.3
|
34.5
|
1.0
|
|
C3A
|
D:BCL103
|
4.3
|
34.5
|
1.0
|
|
C3C
|
D:BCL103
|
4.3
|
34.5
|
1.0
|
|
C2C
|
D:BCL103
|
4.3
|
34.5
|
1.0
|
|
C3B
|
D:BCL103
|
4.4
|
34.5
|
1.0
|
|
C2B
|
D:BCL103
|
4.4
|
34.5
|
1.0
|
|
C2D
|
D:BCL103
|
4.4
|
34.5
|
1.0
|
|
ND1
|
D:HIS33
|
4.5
|
29.4
|
1.0
|
|
CG
|
D:HIS33
|
4.6
|
29.4
|
1.0
|
|
C10
|
E:LMT101
|
4.7
|
43.4
|
1.0
|
|
CBD
|
D:BCL103
|
4.9
|
34.5
|
1.0
|
|
CAA
|
D:BCL103
|
5.0
|
34.5
|
1.0
|
|
Magnesium binding site 9 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 9 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg102
b:34.8
occ:1.00
|
MG
|
E:BCL102
|
0.0
|
34.8
|
1.0
|
|
NA
|
E:BCL102
|
2.0
|
34.8
|
1.0
|
|
NC
|
E:BCL102
|
2.0
|
34.8
|
1.0
|
|
ND
|
E:BCL102
|
2.0
|
34.8
|
1.0
|
|
NB
|
E:BCL102
|
2.1
|
34.8
|
1.0
|
|
NE2
|
E:HIS37
|
2.4
|
32.1
|
1.0
|
|
C4D
|
E:BCL102
|
3.0
|
34.8
|
1.0
|
|
C4A
|
E:BCL102
|
3.0
|
34.8
|
1.0
|
|
C1A
|
E:BCL102
|
3.0
|
34.8
|
1.0
|
|
C4C
|
E:BCL102
|
3.0
|
34.8
|
1.0
|
|
C1C
|
E:BCL102
|
3.0
|
34.8
|
1.0
|
|
CE1
|
E:HIS37
|
3.1
|
32.1
|
1.0
|
|
C4B
|
E:BCL102
|
3.1
|
34.8
|
1.0
|
|
C1B
|
E:BCL102
|
3.1
|
34.8
|
1.0
|
|
C1D
|
E:BCL102
|
3.2
|
34.8
|
1.0
|
|
CHB
|
E:BCL102
|
3.4
|
34.8
|
1.0
|
|
CHC
|
E:BCL102
|
3.4
|
34.8
|
1.0
|
|
CHA
|
E:BCL102
|
3.4
|
34.8
|
1.0
|
|
CHD
|
E:BCL102
|
3.5
|
34.8
|
1.0
|
|
CD2
|
E:HIS37
|
3.5
|
32.1
|
1.0
|
|
C3D
|
E:BCL102
|
4.2
|
34.8
|
1.0
|
|
ND1
|
E:HIS37
|
4.3
|
32.1
|
1.0
|
|
C2A
|
E:BCL102
|
4.3
|
34.8
|
1.0
|
|
C3A
|
E:BCL102
|
4.3
|
34.8
|
1.0
|
|
C3C
|
E:BCL102
|
4.3
|
34.8
|
1.0
|
|
C2C
|
E:BCL102
|
4.3
|
34.8
|
1.0
|
|
C3B
|
E:BCL102
|
4.4
|
34.8
|
1.0
|
|
C2D
|
E:BCL102
|
4.4
|
34.8
|
1.0
|
|
C2B
|
E:BCL102
|
4.4
|
34.8
|
1.0
|
|
CMB
|
F:BCL101
|
4.4
|
36.8
|
1.0
|
|
CG
|
E:HIS37
|
4.5
|
32.1
|
1.0
|
|
CBD
|
E:BCL102
|
4.9
|
34.8
|
1.0
|
|
C7
|
E:BCL102
|
4.9
|
34.8
|
1.0
|
|
CBB
|
F:BCL101
|
4.9
|
36.8
|
1.0
|
|
Magnesium binding site 10 out
of 37 in 7vrj
Go back to
Magnesium Binding Sites List in 7vrj
Magnesium binding site 10 out
of 37 in the Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Photosynthetic LH1-Rc Super-Complex of Allochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:36.8
occ:1.00
|
MG
|
F:BCL101
|
0.0
|
36.8
|
1.0
|
|
NA
|
F:BCL101
|
2.0
|
36.8
|
1.0
|
|
NC
|
F:BCL101
|
2.0
|
36.8
|
1.0
|
|
ND
|
F:BCL101
|
2.0
|
36.8
|
1.0
|
|
NB
|
F:BCL101
|
2.1
|
36.8
|
1.0
|
|
NE2
|
F:HIS33
|
2.6
|
33.0
|
1.0
|
|
C4D
|
F:BCL101
|
2.9
|
36.8
|
1.0
|
|
C1A
|
F:BCL101
|
3.0
|
36.8
|
1.0
|
|
C4A
|
F:BCL101
|
3.0
|
36.8
|
1.0
|
|
C4C
|
F:BCL101
|
3.0
|
36.8
|
1.0
|
|
C1C
|
F:BCL101
|
3.0
|
36.8
|
1.0
|
|
C1B
|
F:BCL101
|
3.1
|
36.8
|
1.0
|
|
C4B
|
F:BCL101
|
3.1
|
36.8
|
1.0
|
|
C1D
|
F:BCL101
|
3.2
|
36.8
|
1.0
|
|
CE1
|
F:HIS33
|
3.2
|
33.0
|
1.0
|
|
CHB
|
F:BCL101
|
3.4
|
36.8
|
1.0
|
|
CHC
|
F:BCL101
|
3.4
|
36.8
|
1.0
|
|
CHA
|
F:BCL101
|
3.4
|
36.8
|
1.0
|
|
CHD
|
F:BCL101
|
3.5
|
36.8
|
1.0
|
|
CD2
|
F:HIS33
|
3.8
|
33.0
|
1.0
|
|
CMB
|
E:BCL102
|
4.1
|
34.8
|
1.0
|
|
C12
|
G:LMT101
|
4.1
|
47.0
|
1.0
|
|
C3D
|
F:BCL101
|
4.2
|
36.8
|
1.0
|
|
C2A
|
F:BCL101
|
4.3
|
36.8
|
1.0
|
|
C3A
|
F:BCL101
|
4.3
|
36.8
|
1.0
|
|
C3C
|
F:BCL101
|
4.3
|
36.8
|
1.0
|
|
C2C
|
F:BCL101
|
4.3
|
36.8
|
1.0
|
|
C10
|
G:LMT101
|
4.4
|
47.0
|
1.0
|
|
C3B
|
F:BCL101
|
4.4
|
36.8
|
1.0
|
|
C2B
|
F:BCL101
|
4.4
|
36.8
|
1.0
|
|
C2D
|
F:BCL101
|
4.4
|
36.8
|
1.0
|
|
ND1
|
F:HIS33
|
4.5
|
33.0
|
1.0
|
|
CG
|
F:HIS33
|
4.8
|
33.0
|
1.0
|
|
CMD
|
G:BCL102
|
4.8
|
38.3
|
1.0
|
|
C11
|
G:LMT101
|
4.8
|
47.0
|
1.0
|
|
C2B
|
E:BCL102
|
4.9
|
34.8
|
1.0
|
|
CBD
|
F:BCL101
|
4.9
|
36.8
|
1.0
|
|
CBB
|
E:BCL102
|
5.0
|
34.8
|
1.0
|
|
Reference:
K.Tani,
K.Kobayashi,
N.Hosogi,
X.C.Ji,
S.Nagashima,
K.V.P.Nagashima,
A.Izumida,
K.Inoue,
Y.Tsukatani,
R.Kanno,
M.Hall,
L.J.Yu,
I.Ishikawa,
Y.Okura,
M.T.Madigan,
A.Mizoguchi,
B.M.Humbel,
Y.Kimura,
Z.Y.Wang-Otomo.
A Ca 2+ -Binding Motif Underlies the Unusual Properties of Certain Photosynthetic Bacterial Core Light-Harvesting Complexes. J.Biol.Chem. V. 298 01967 2022.
ISSN: ESSN 1083-351X
PubMed: 35460693
DOI: 10.1016/J.JBC.2022.101967
Page generated: Thu Oct 3 10:39:04 2024
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