Magnesium in PDB 7vx8: Cryo-Em Structure of Atp-Bound Human Very Long-Chain Fatty Acid Abc Transporter ABCD1

The binding sites of Magnesium atom in the Cryo-Em Structure of Atp-Bound Human Very Long-Chain Fatty Acid Abc Transporter ABCD1 (pdb code 7vx8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Atp-Bound Human Very Long-Chain Fatty Acid Abc Transporter ABCD1, PDB code: 7vx8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Atp-Bound Human Very Long-Chain Fatty Acid Abc Transporter ABCD1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Atp-Bound Human Very Long-Chain Fatty Acid Abc Transporter ABCD1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:28.3 occ:1.00 OE1 B:GLN544 2.0 25.3 1.0 OG B:SER514 2.2 25.6 1.0 O1G B:ATP801 2.3 28.3 1.0 O1B B:ATP801 2.4 28.3 1.0 CD B:GLN544 3.2 25.3 1.0 CB B:SER514 3.2 25.6 1.0 PG B:ATP801 3.6 28.3 1.0 PB B:ATP801 3.6 28.3 1.0 O3B B:ATP801 3.7 28.3 1.0 NE2 B:GLN544 3.8 25.3 1.0 O1A B:ATP801 4.1 28.3 1.0 OD1 B:ASP629 4.2 28.2 1.0 CA B:SER514 4.2 25.6 1.0 O3A B:ATP801 4.2 28.3 1.0 O3G B:ATP801 4.2 28.3 1.0 N A:GLY607 4.3 26.5 1.0 N B:SER514 4.3 25.6 1.0 OD2 B:ASP629 4.3 28.2 1.0 CG B:GLN544 4.3 25.3 1.0 O2G B:ATP801 4.4 28.3 1.0 CB B:GLN544 4.5 25.3 1.0 CG B:ASP629 4.6 28.2 1.0 O2B B:ATP801 4.7 28.3 1.0 PA B:ATP801 4.7 28.3 1.0 CB A:SER606 4.8 27.2 1.0 CA A:GLY607 4.9 26.5 1.0 NE2 B:GLN630 4.9 30.4 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Atp-Bound Human Very Long-Chain Fatty Acid Abc Transporter ABCD1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Atp-Bound Human Very Long-Chain Fatty Acid Abc Transporter ABCD1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:27.7 occ:1.00 OE1 A:GLN544 2.0 25.1 1.0 O1B A:ATP801 2.6 28.3 1.0 CB A:SER514 2.7 25.4 1.0 O1G A:ATP801 2.8 28.3 1.0 CD A:GLN544 3.2 25.1 1.0 OG A:SER514 3.2 25.4 1.0 O3B A:ATP801 3.6 28.3 1.0 PB A:ATP801 3.7 28.3 1.0 PG A:ATP801 3.7 28.3 1.0 O3A A:ATP801 3.8 28.3 1.0 NE2 A:GLN544 3.9 25.1 1.0 CA A:SER514 4.1 25.4 1.0 O3G A:ATP801 4.1 28.3 1.0 N B:GLY607 4.2 26.4 1.0 OD1 A:ASP629 4.3 28.0 1.0 O1A A:ATP801 4.3 28.3 1.0 CG A:GLN544 4.4 25.1 1.0 OD2 A:ASP629 4.4 28.0 1.0 N A:SER514 4.4 25.4 1.0 OG B:SER606 4.4 27.1 1.0 CB A:GLN544 4.5 25.1 1.0 PA A:ATP801 4.6 28.3 1.0 CG A:ASP629 4.7 28.0 1.0 CA B:GLY607 4.8 26.4 1.0 O2G A:ATP801 4.8 28.3 1.0 O2B A:ATP801 4.8 28.3 1.0 NH2 A:ARG518 5.0 22.4 1.0

Z.P.Chen, D.Xu, L.Wang, Y.X.Mao, Y.Li, M.T.Cheng, C.Z.Zhou, W.T.Hou, Y.Chen. Structural Basis of Substrate Recognition and Translocation By Human Very Long-Chain Fatty Acid Transporter ABCD1. Nat Commun V. 13 3299 2022.
ISSN: ESSN 2041-1723
PubMed: 35676282
DOI: 10.1038/S41467-022-30974-5