Magnesium in PDB 7w47: Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan

Enzymatic activity of Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan

All present enzymatic activity of Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan:
3.6.3.10;

Protein crystallography data

The structure of Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan, PDB code: 7w47 was solved by K.Abe, S.Tanaka, M.Morita, T.Yamagishi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.26 / 3.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.99, 104.99, 367.79, 90, 90, 120
R / Rfree (%) 22.2 / 28.5

Other elements in 7w47:

The structure of Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan also contains other interesting chemical elements:

Rubidium (Rb) 3 atoms
Fluorine (F) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan (pdb code 7w47). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan, PDB code: 7w47:

Magnesium binding site 1 out of 1 in 7w47

Go back to Magnesium Binding Sites List in 7w47
Magnesium binding site 1 out of 1 in the Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Gastric Proton Pump Complexed with Tegoprazan within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1101

b:21.9
occ:1.00
 F1 A:BFD385 2.1 42.9 1.0
OD1 A:ASP726 2.2 43.2 1.0
O A:THR387 2.5 32.2 1.0
OD1 A:BFD385 2.6 38.9 1.0
BE A:BFD385 2.6 40.5 1.0
OD2 A:BFD385 2.7 58.9 1.0
CG A:ASP726 3.0 44.9 1.0
CG A:BFD385 3.1 45.9 1.0
OD2 A:ASP726 3.1 46.4 1.0
O A:SER225 3.6 57.0 1.0
C A:THR387 3.7 37.2 1.0
F3 A:BFD385 3.9 43.9 1.0
OD1 A:ASN729 4.0 44.1 1.0
N A:GLY727 4.1 46.5 1.0
F2 A:BFD385 4.1 38.6 1.0
OD2 A:ASP730 4.3 52.9 1.0
CB A:THR387 4.3 40.3 1.0
CA A:THR387 4.4 37.0 1.0
ND2 A:ASN729 4.4 24.1 1.0
N A:THR387 4.4 47.7 1.0
CB A:ASP726 4.5 39.7 1.0
CB A:BFD385 4.5 39.6 1.0
CG A:ASN729 4.6 35.6 1.0
CA A:GLY727 4.7 48.8 1.0
C A:SER225 4.7 62.1 1.0
N A:GLY388 4.7 38.5 1.0
CG2 A:THR387 4.9 19.9 1.0
N A:ASP726 4.9 31.7 1.0

Reference:

K.Abe, S.Tanaka, M.Morita, T.Yamagishi. Crystal Structure of the Gastric Proton Pump with Pcab To Be Published.
Page generated: Thu Oct 3 11:04:47 2024

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