Magnesium in PDB 7w48: Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556

Enzymatic activity of Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556

All present enzymatic activity of Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556:
3.6.3.10;

Protein crystallography data

The structure of Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556, PDB code: 7w48 was solved by K.Abe, S.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.18 / 3.50
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.75, 104.75, 368.79, 90, 90, 120
R / Rfree (%) 25.2 / 30.7

Other elements in 7w48:

The structure of Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556 also contains other interesting chemical elements:

Rubidium (Rb) 3 atoms
Fluorine (F) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556 (pdb code 7w48). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556, PDB code: 7w48:

Magnesium binding site 1 out of 1 in 7w48

Go back to Magnesium Binding Sites List in 7w48
Magnesium binding site 1 out of 1 in the Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Gastric Proton Pump Complexed with Pf- 03716556 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1101

b:156.1
occ:1.00
 OD1 A:ASP726 2.0 63.0 1.0
F1 A:BFD385 2.2 71.7 1.0
CG A:ASP726 2.7 69.7 1.0
O A:THR387 2.8 67.8 1.0
O A:SER225 2.8 72.6 1.0
OD2 A:ASP726 2.9 69.3 1.0
BE A:BFD385 3.2 66.0 1.0
OD1 A:BFD385 3.3 61.5 1.0
N A:GLY727 3.4 63.2 1.0
OD1 A:ASN729 3.5 74.8 1.0
OD2 A:BFD385 3.6 68.5 1.0
OD2 A:ASP730 3.8 70.7 1.0
CG A:BFD385 3.8 64.6 1.0
CA A:GLY727 3.9 57.5 1.0
C A:SER225 3.9 68.6 1.0
ND2 A:ASN729 4.0 67.0 1.0
C A:THR387 4.0 69.6 1.0
F3 A:BFD385 4.1 74.4 1.0
CG A:ASN729 4.1 65.9 1.0
CB A:ASP726 4.2 66.3 1.0
C A:ASP726 4.4 56.6 1.0
CA A:SER226 4.5 59.8 1.0
N A:ASP726 4.5 53.7 1.0
CG A:ASP730 4.6 63.8 1.0
CA A:ASP726 4.6 55.7 1.0
OD1 A:ASP730 4.6 59.7 1.0
N A:SER226 4.7 60.4 1.0
O A:SER226 4.7 53.5 1.0
CB A:THR387 4.7 72.2 1.0
F2 A:BFD385 4.8 63.8 1.0
CA A:THR387 4.8 71.6 1.0
C A:GLY727 4.8 49.9 1.0
C A:SER226 4.8 52.6 1.0
CB A:SER225 4.9 75.9 1.0
O A:THR228 4.9 67.8 1.0
CA A:SER225 4.9 68.5 1.0
N A:GLY388 4.9 67.0 1.0

Reference:

K.Abe, S.Tanaka, M.Morita, T.Yamagishi. Crystal Structure of the Gastric Proton Pump with Pcab To Be Published.
Page generated: Thu Oct 3 11:05:03 2024

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