Magnesium in PDB 7w49: Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan

Enzymatic activity of Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan

All present enzymatic activity of Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan:
3.6.3.10;

Protein crystallography data

The structure of Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan, PDB code: 7w49 was solved by K.Abe, S.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.53 / 3.10
*Space group*	P 3₁ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	105.533, 105.533, 370.889, 90, 90, 120
*R / R_free (%)*	24.9 / 30.8

Other elements in 7w49:

The structure of Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan also contains other interesting chemical elements:

Rubidium	(Rb)	2 atoms
Fluorine	(F)	3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan (pdb code 7w49). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan, PDB code: 7w49:

Magnesium binding site 1 out of 1 in 7w49

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Magnesium Binding Sites List in 7w49

Magnesium binding site 1 out of 1 in the Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Gastric Proton Pump Complexed with Soraprazan within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg1101 b:57.1 occ:1.00	F1	A:BFD385	2.4	80.2	1.0
	OD1	A:ASP726	2.8	66.0	1.0
	OD1	A:BFD385	2.8	46.0	1.0
	O	A:SER225	3.0	77.7	1.0
	BE	A:BFD385	3.0	59.1	1.0
	O	A:THR387	3.3	55.0	1.0
	CG	A:ASP726	3.5	67.4	1.0
	OD1	A:ASN729	3.6	66.5	1.0
	N	A:GLY727	3.6	47.4	1.0
	OD2	A:ASP726	3.7	61.2	1.0
	CG	A:BFD385	3.7	60.2	1.0
	CA	A:GLY727	3.8	54.2	1.0
	OD2	A:BFD385	3.8	71.0	1.0
	F3	A:BFD385	3.9	58.9	1.0
	ND2	A:ASN729	4.0	53.8	1.0
	OD2	A:ASP730	4.1	68.4	1.0
	C	A:SER225	4.1	73.1	1.0
	CG	A:ASN729	4.2	54.3	1.0
	C	A:THR387	4.4	66.2	1.0
	CA	A:SER226	4.5	67.5	1.0
	O	A:SER226	4.6	68.6	1.0
	C	A:ASP726	4.6	59.2	1.0
	F2	A:BFD385	4.7	65.2	1.0
	O	A:THR228	4.7	74.3	1.0
	N	A:SER226	4.8	74.2	1.0
	CB	A:ASP726	4.8	63.5	1.0
	C	A:GLY727	4.8	45.8	1.0
	CG	A:ASP730	4.8	52.3	1.0
	N	A:ASP726	4.9	56.6	1.0
	C	A:SER226	4.9	66.7	1.0
	OD1	A:ASP730	4.9	70.2	1.0
	CB	A:THR387	5.0	59.1	1.0

Reference:

K.Abe, S.Tanaka, M.Morita, T.Yamagishi. Crystal Structure of the Gastric Proton Pump with Pcab To Be Published.

Page generated: Thu Oct 3 11:05:23 2024

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