Magnesium in PDB 7w8d: The Structure of Deinococcus Radiodurans Ruvc

Enzymatic activity of The Structure of Deinococcus Radiodurans Ruvc

All present enzymatic activity of The Structure of Deinococcus Radiodurans Ruvc:
3.1.22.4;

Protein crystallography data

The structure of The Structure of Deinococcus Radiodurans Ruvc, PDB code: 7w8d was solved by K.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.71 / 2.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.2, 72.77, 112.3, 90, 90, 90
R / Rfree (%) 27.3 / 30.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Deinococcus Radiodurans Ruvc (pdb code 7w8d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of Deinococcus Radiodurans Ruvc, PDB code: 7w8d:

Magnesium binding site 1 out of 1 in 7w8d

Go back to Magnesium Binding Sites List in 7w8d
Magnesium binding site 1 out of 1 in the The Structure of Deinococcus Radiodurans Ruvc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Deinococcus Radiodurans Ruvc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:72.0
occ:1.00
OE1 A:GLU67 2.3 57.4 1.0
OD1 A:ASP7 2.5 57.6 1.0
CG A:ASP7 3.3 59.1 1.0
CD A:GLU67 3.3 59.3 1.0
OD2 A:ASP7 3.4 61.2 1.0
OE2 A:GLU67 3.6 60.0 1.0
CG A:GLU67 4.7 57.1 1.0
CB A:ASP7 4.8 57.3 1.0
O A:PRO8 4.8 52.3 1.0

Reference:

Y.Sun, J.Yang, G.Xu, K.Cheng. Biochemical and Structural Study of Ruvc and Yqgf From Deinococcus Radiodurans. Mbio V. 13 83422 2022.
ISSN: ESSN 2150-7511
PubMed: 36000732
DOI: 10.1128/MBIO.01834-22
Page generated: Fri Apr 7 01:36:20 2023

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