Magnesium in PDB 7w8f: Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal

The structure of Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal, PDB code: 7w8f was solved by K.Tomoo, K.Miyamoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.10 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.8, 57.89, 62.7, 90, 95.02, 90
R / Rfree (%)	17.7 / 21.9

The structure of Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal (pdb code 7w8f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal, PDB code: 7w8f:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:17.2 occ:1.00 O A:HOH451 3.3 26.8 1.0 N A:TRP28 3.3 19.0 1.0 NH1 A:ARG69 3.4 21.2 1.0 NE1 A:TRP261 3.6 16.2 1.0 CB A:TRP28 3.6 19.4 1.0 CD A:ARG69 3.8 20.7 1.0 CB A:ASP27 3.9 25.2 1.0 CG A:TRP28 3.9 18.2 1.0 CA A:TRP28 4.0 18.7 1.0 C1 A:KTY301 4.1 19.8 1.0 CE3 A:TRP28 4.1 17.8 1.0 CZ2 A:TRP261 4.2 16.9 1.0 CD2 A:TRP28 4.2 19.3 1.0 N A:VAL29 4.2 18.5 1.0 CE2 A:TRP261 4.2 17.1 1.0 C A:ASP27 4.3 19.1 1.0 CA A:ASP27 4.4 22.5 1.0 CZ A:ARG69 4.4 21.3 1.0 CG A:ASP27 4.5 29.4 1.0 NE A:ARG69 4.6 21.7 1.0 C A:TRP28 4.6 19.2 1.0 CD1 A:TRP261 4.7 15.9 1.0 OD1 A:ASP27 4.8 32.6 1.0 O A:PHE263 4.8 13.8 1.0 CD1 A:TRP28 4.9 18.7 1.0 O A:HOH470 5.0 27.2 1.0 O A:HOH531 5.0 25.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg305 b:11.2 occ:1.00 NE2 A:HIS179 3.0 17.5 1.0 OG1 A:THR262 3.1 17.9 1.0 NE A:ARG169 3.3 21.3 1.0 NH1 A:ARG177 3.4 27.4 1.0 CE2 A:PHE263 3.5 15.1 1.0 CD A:ARG177 3.6 19.7 1.0 CE1 A:HIS179 3.6 16.9 1.0 CZ A:PHE263 3.6 15.7 1.0 CB A:ARG169 3.6 21.6 1.0 CG A:ARG169 3.7 21.6 1.0 CB A:THR262 3.8 16.9 1.0 CG2 A:THR262 3.9 18.1 1.0 CD A:ARG169 4.1 21.9 1.0 CZ A:ARG169 4.2 20.9 1.0 NH2 A:ARG169 4.2 22.7 1.0 CD2 A:HIS179 4.3 18.7 1.0 CZ A:ARG177 4.3 28.0 1.0 NE A:ARG177 4.4 24.0 1.0 CB A:ARG177 4.5 19.4 1.0 CD2 A:PHE263 4.6 14.8 1.0 CG A:ARG177 4.7 20.6 1.0 C21 A:KTY301 4.7 29.2 1.0 CE1 A:PHE263 4.8 14.9 1.0 ND1 A:HIS179 4.8 18.1 1.0 O6 A:KTY301 4.9 25.1 1.0

K.Tomoo, K.Miyamoto. Crystal Structure of Siderophore Binding Protein Vatd From Vibrio Vulnificus M2799 Complexed with Desferal To Be Published.