Magnesium in PDB 7wad: Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas

All present enzymatic activity of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas:
6.3.2.29; 6.3.2.30;

The binding sites of Magnesium atom in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas (pdb code 7wad). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, PDB code: 7wad:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:105.5 occ:1.00 O2B A:AGS1003 2.0 105.6 1.0 O3G A:AGS1003 2.1 105.6 1.0 O3B A:AGS1003 2.4 105.6 1.0 OG1 A:THR500 2.5 85.9 1.0 CG2 A:THR522 2.5 94.2 1.0 PG A:AGS1003 2.6 105.6 1.0 PB A:AGS1003 2.8 105.6 1.0 O2G A:AGS1003 3.0 105.6 1.0 OG1 A:THR522 3.3 94.2 1.0 CB A:THR522 3.4 94.2 1.0 OE2 A:GLU558 3.5 88.0 1.0 O1B A:AGS1003 3.8 105.6 1.0 O2A A:AGS1003 3.8 105.6 1.0 CB A:THR500 3.8 85.9 1.0 O3A A:AGS1003 3.9 105.6 1.0 OE1 A:GLU558 4.2 88.0 1.0 CD A:GLU558 4.2 88.0 1.0 S1G A:AGS1003 4.4 105.6 1.0 PA A:AGS1003 4.5 105.6 1.0 N A:THR500 4.6 85.9 1.0 CG2 A:THR500 4.7 85.9 1.0 CA A:THR522 4.7 94.2 1.0 CA A:THR500 4.7 85.9 1.0 N A:THR522 4.8 94.2 1.0

Magnesium binding site 2 out of 4 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:106.2 occ:1.00 O2B B:AGS1003 2.0 106.0 1.0 O3G B:AGS1003 2.1 106.0 1.0 O3B B:AGS1003 2.4 106.0 1.0 PG B:AGS1003 2.5 106.0 1.0 OG1 B:THR500 2.5 85.5 1.0 CG2 B:THR522 2.5 93.3 1.0 PB B:AGS1003 2.7 106.0 1.0 O2G B:AGS1003 3.0 106.0 1.0 OG1 B:THR522 3.3 93.3 1.0 CB B:THR522 3.5 93.3 1.0 OE2 B:GLU558 3.5 87.4 1.0 O2A B:AGS1003 3.7 106.0 1.0 O1B B:AGS1003 3.8 106.0 1.0 CB B:THR500 3.8 85.5 1.0 O3A B:AGS1003 3.9 106.0 1.0 OE1 B:GLU558 4.2 87.4 1.0 CD B:GLU558 4.3 87.4 1.0 S1G B:AGS1003 4.4 106.0 1.0 PA B:AGS1003 4.5 106.0 1.0 N B:THR500 4.6 85.5 1.0 CG2 B:THR500 4.7 85.5 1.0 CA B:THR522 4.7 93.3 1.0 CA B:THR500 4.7 85.5 1.0 N B:THR522 4.8 93.3 1.0

Magnesium binding site 3 out of 4 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:106.6 occ:1.00 O2B C:AGS1003 2.0 104.8 1.0 O3G C:AGS1003 2.1 104.8 1.0 O3B C:AGS1003 2.5 104.8 1.0 OG1 C:THR500 2.5 85.3 1.0 CG2 C:THR522 2.5 94.2 1.0 PG C:AGS1003 2.6 104.8 1.0 PB C:AGS1003 2.8 104.8 1.0 O2G C:AGS1003 3.0 104.8 1.0 OG1 C:THR522 3.3 94.2 1.0 CB C:THR522 3.4 94.2 1.0 OE2 C:GLU558 3.5 86.8 1.0 CB C:THR500 3.8 85.3 1.0 O2A C:AGS1003 3.8 104.8 1.0 O1B C:AGS1003 3.8 104.8 1.0 O3A C:AGS1003 3.9 104.8 1.0 OE1 C:GLU558 4.2 86.8 1.0 CD C:GLU558 4.2 86.8 1.0 S1G C:AGS1003 4.4 104.8 1.0 PA C:AGS1003 4.5 104.8 1.0 N C:THR500 4.6 85.3 1.0 CG2 C:THR500 4.7 85.3 1.0 CA C:THR522 4.7 94.2 1.0 CA C:THR500 4.7 85.3 1.0 N C:THR522 4.8 94.2 1.0

Magnesium binding site 4 out of 4 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1001 b:105.8 occ:1.00 O2B D:AGS1003 2.0 105.6 1.0 O3G D:AGS1003 2.1 105.6 1.0 O3B D:AGS1003 2.5 105.6 1.0 OG1 D:THR500 2.5 85.5 1.0 CG2 D:THR522 2.5 94.0 1.0 PG D:AGS1003 2.6 105.6 1.0 PB D:AGS1003 2.8 105.6 1.0 O2G D:AGS1003 3.1 105.6 1.0 OG1 D:THR522 3.2 94.0 1.0 CB D:THR522 3.4 94.0 1.0 OE2 D:GLU558 3.5 87.2 1.0 O2A D:AGS1003 3.8 105.6 1.0 CB D:THR500 3.8 85.5 1.0 O1B D:AGS1003 3.8 105.6 1.0 O3A D:AGS1003 3.9 105.6 1.0 OE1 D:GLU558 4.2 87.2 1.0 CD D:GLU558 4.2 87.2 1.0 S1G D:AGS1003 4.4 105.6 1.0 PA D:AGS1003 4.5 105.6 1.0 N D:THR500 4.6 85.5 1.0 CG2 D:THR500 4.7 85.5 1.0 CA D:THR522 4.7 94.0 1.0 CA D:THR500 4.7 85.5 1.0 N D:THR522 4.7 94.0 1.0

T.Miyakawa, J.Yang, M.Kawasaki, N.Adachi, A.Fujii, Y.Miyauchi, T.Muramatsu, T.Moriya, T.Senda, M.Tanokura. Structural Bases For Aspartate Recognition and Polymerization Efficiency of Cyanobacterial Cyanophycin Synthetase. Nat Commun V. 13 5097 2022.
ISSN: ESSN 2041-1723
PubMed: 36042318
DOI: 10.1038/S41467-022-32834-8