Magnesium in PDB 7wae: Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate

Enzymatic activity of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate

All present enzymatic activity of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate:
6.3.2.29; 6.3.2.30;

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Magnesium atom in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate (pdb code 7wae). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 11 binding sites of Magnesium where determined in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate, PDB code: 7wae:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 11 in 7wae

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Magnesium binding site 1 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:70.2
occ:1.00
 OE1 A:GLU450 2.3 61.5 1.0
OE2 A:GLU450 2.3 61.5 1.0
O2G A:AGS1003 2.5 91.5 1.0
CD A:GLU450 2.6 61.5 1.0
OD1 A:ASN452 3.1 53.5 1.0
O2B A:AGS1003 3.3 91.5 1.0
PG A:AGS1003 4.0 91.5 1.0
CE A:LYS220 4.1 66.3 1.0
CG A:GLU450 4.1 61.5 1.0
O1A A:AGS1003 4.1 91.5 1.0
CG A:ASN452 4.2 53.5 1.0
NZ A:LYS220 4.2 66.3 1.0
O3G A:AGS1003 4.4 91.5 1.0
PB A:AGS1003 4.7 91.5 1.0
ND2 A:ASN452 4.8 53.5 1.0
CB A:GLU450 4.9 61.5 1.0
O3B A:AGS1003 4.9 91.5 1.0

Magnesium binding site 2 out of 11 in 7wae

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Magnesium binding site 2 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:74.9
occ:1.00
 O2B A:AGS1004 2.0 84.0 1.0
OG1 A:THR500 2.0 66.0 1.0
OG1 A:THR522 2.0 69.2 1.0
O3G A:AGS1004 2.1 84.0 1.0
OE2 A:GLU558 2.8 58.0 1.0
PB A:AGS1004 2.9 84.0 1.0
O3A A:AGS1004 3.0 84.0 1.0
CB A:THR522 3.0 69.2 1.0
NH2 A:ARG731 3.2 108.8 1.0
CB A:THR500 3.3 66.0 1.0
PG A:AGS1004 3.3 84.0 1.0
O3B A:AGS1004 3.4 84.0 1.0
CD A:GLU558 3.7 58.0 1.0
CG2 A:THR522 3.8 69.2 1.0
OE1 A:GLU558 3.8 58.0 1.0
N A:THR500 4.1 66.0 1.0
CA A:THR500 4.2 66.0 1.0
O2G A:AGS1004 4.2 84.0 1.0
CA A:THR522 4.2 69.2 1.0
CG2 A:THR500 4.2 66.0 1.0
O1B A:AGS1004 4.3 84.0 1.0
N A:THR522 4.3 69.2 1.0
CZ A:ARG731 4.4 108.8 1.0
PA A:AGS1004 4.5 84.0 1.0
CE2 A:TYR746 4.6 121.1 1.0
S1G A:AGS1004 4.7 84.0 1.0
NE A:ARG731 4.9 108.8 1.0
O2A A:AGS1004 4.9 84.0 1.0
CD2 A:TYR746 4.9 121.1 1.0

Magnesium binding site 3 out of 11 in 7wae

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Magnesium binding site 3 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1001

b:67.0
occ:1.00
 OE1 B:GLU450 2.2 58.6 1.0
OE2 B:GLU450 2.2 58.6 1.0
CD B:GLU450 2.5 58.6 1.0
O2G B:AGS1004 2.6 86.6 1.0
OD1 B:ASN452 2.9 52.1 1.0
O2B B:AGS1004 3.4 86.6 1.0
MG B:MG1002 3.9 70.1 1.0
CG B:GLU450 4.0 58.6 1.0
CG B:ASN452 4.1 52.1 1.0
PG B:AGS1004 4.1 86.6 1.0
O1A B:AGS1004 4.1 86.6 1.0
CE B:LYS220 4.4 64.3 1.0
O3G B:AGS1004 4.5 86.6 1.0
ND2 B:ASN452 4.6 52.1 1.0
CB B:GLU450 4.8 58.6 1.0
PB B:AGS1004 4.8 86.6 1.0
NZ B:LYS220 5.0 64.3 1.0

Magnesium binding site 4 out of 11 in 7wae

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Magnesium binding site 4 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:70.1
occ:1.00
 OD2 B:ASP431 2.1 55.3 1.0
OE2 B:GLU450 2.2 58.6 1.0
O1A B:AGS1004 3.0 86.6 1.0
CG B:ASP431 3.2 55.3 1.0
CD B:GLU450 3.3 58.6 1.0
O2G B:AGS1004 3.4 86.6 1.0
CG B:GLU450 3.8 58.6 1.0
S1G B:AGS1004 3.8 86.6 1.0
MG B:MG1001 3.9 67.0 1.0
OD1 B:ASP431 4.0 55.3 1.0
NH1 B:ARG323 4.1 73.5 1.0
CB B:ASP431 4.2 55.3 1.0
PG B:AGS1004 4.2 86.6 1.0
O3' B:AGS1004 4.3 86.6 1.0
OE1 B:GLU450 4.3 58.6 1.0
ND2 B:ASN452 4.4 52.1 1.0
OD1 B:ASN452 4.4 52.1 1.0
PA B:AGS1004 4.4 86.6 1.0
NH2 B:ARG309 4.5 53.3 1.0
C5' B:AGS1004 4.8 86.6 1.0
CG B:ASN452 4.8 52.1 1.0
O2B B:AGS1004 4.9 86.6 1.0
NH2 B:ARG323 4.9 73.5 1.0
CZ B:ARG323 4.9 73.5 1.0
O5' B:AGS1004 4.9 86.6 1.0

Magnesium binding site 5 out of 11 in 7wae

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Magnesium binding site 5 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1003

b:66.6
occ:1.00
 O2B B:AGS1005 2.0 75.4 1.0
OG1 B:THR522 2.0 62.1 1.0
OG1 B:THR500 2.0 58.2 1.0
O3G B:AGS1005 2.1 75.4 1.0
OE2 B:GLU558 2.8 50.7 1.0
PB B:AGS1005 3.0 75.4 1.0
CB B:THR522 3.0 62.1 1.0
O3A B:AGS1005 3.0 75.4 1.0
NH2 B:ARG731 3.3 101.0 1.0
CB B:THR500 3.3 58.2 1.0
PG B:AGS1005 3.3 75.4 1.0
O3B B:AGS1005 3.5 75.4 1.0
CD B:GLU558 3.7 50.7 1.0
CG2 B:THR522 3.7 62.1 1.0
OE1 B:GLU558 3.8 50.7 1.0
N B:THR500 4.1 58.2 1.0
CA B:THR522 4.2 62.1 1.0
CA B:THR500 4.2 58.2 1.0
CG2 B:THR500 4.2 58.2 1.0
O1B B:AGS1005 4.3 75.4 1.0
N B:THR522 4.3 62.1 1.0
O2G B:AGS1005 4.3 75.4 1.0
CZ B:ARG731 4.5 101.0 1.0
PA B:AGS1005 4.5 75.4 1.0
CE2 B:TYR746 4.5 111.1 1.0
S1G B:AGS1005 4.7 75.4 1.0
NE B:ARG731 4.9 101.0 1.0
O2A B:AGS1005 5.0 75.4 1.0
CD2 B:TYR746 5.0 111.1 1.0

Magnesium binding site 6 out of 11 in 7wae

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Magnesium binding site 6 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1001

b:77.1
occ:1.00
 OD1 C:ASN266 2.4 103.6 1.0
O2G C:AGS1004 2.8 88.8 1.0
OE1 C:GLU450 2.9 60.9 1.0
OE2 C:GLU450 2.9 60.9 1.0
OD1 C:ASN452 2.9 53.4 1.0
O2B C:AGS1004 3.1 88.8 1.0
O3G C:AGS1004 3.1 88.8 1.0
CD C:GLU450 3.2 60.9 1.0
CG C:ASN266 3.4 103.6 1.0
PG C:AGS1004 3.6 88.8 1.0
ND2 C:ASN266 4.0 103.6 1.0
CG C:ASN452 4.0 53.4 1.0
MG C:MG1002 4.2 73.7 1.0
PB C:AGS1004 4.3 88.8 1.0
O3B C:AGS1004 4.4 88.8 1.0
CB C:ASN266 4.5 103.6 1.0
NZ C:LYS220 4.6 67.2 1.0
CA C:ASN266 4.6 103.6 1.0
O1A C:AGS1004 4.6 88.8 1.0
CE C:LYS220 4.6 67.2 1.0
ND2 C:ASN452 4.7 53.4 1.0
CG C:GLU450 4.7 60.9 1.0
N C:HIS267 4.8 102.8 1.0
O1B C:AGS1004 5.0 88.8 1.0
OXT M:ARG102 5.0 87.9 1.0

Magnesium binding site 7 out of 11 in 7wae

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Magnesium binding site 7 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1002

b:73.7
occ:1.00
 O3G C:AGS1004 2.1 88.8 1.0
OE2 C:GLU450 2.3 60.9 1.0
OD1 C:ASP431 3.1 56.0 1.0
PG C:AGS1004 3.1 88.8 1.0
OD2 C:ASP431 3.1 56.0 1.0
CG C:ASP431 3.2 56.0 1.0
S1G C:AGS1004 3.3 88.8 1.0
O1A C:AGS1004 3.3 88.8 1.0
NH2 C:ARG323 3.3 73.4 1.0
CD C:GLU450 3.4 60.9 1.0
O2G C:AGS1004 3.9 88.8 1.0
NH2 C:ARG309 4.0 53.9 1.0
CG C:GLU450 4.0 60.9 1.0
ND2 C:ASN452 4.1 53.4 1.0
MG C:MG1001 4.2 77.1 1.0
CB C:ASP431 4.3 56.0 1.0
O2B C:AGS1004 4.3 88.8 1.0
O3' C:AGS1004 4.4 88.8 1.0
O3B C:AGS1004 4.4 88.8 1.0
OE1 C:GLU450 4.4 60.9 1.0
OD1 C:ASN452 4.5 53.4 1.0
CZ C:ARG323 4.5 73.4 1.0
CG C:ASN452 4.7 53.4 1.0
PA C:AGS1004 4.8 88.8 1.0
NH1 C:ARG323 4.9 73.4 1.0
C5' C:AGS1004 5.0 88.8 1.0

Magnesium binding site 8 out of 11 in 7wae

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Magnesium binding site 8 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1003

b:56.4
occ:1.00
 OG1 C:THR522 2.0 57.7 1.0
O2B C:AGS1005 2.0 59.0 1.0
OG1 C:THR500 2.1 50.9 1.0
O3G C:AGS1005 2.2 59.0 1.0
CB C:THR522 2.9 57.7 1.0
PB C:AGS1005 3.0 59.0 1.0
PG C:AGS1005 3.1 59.0 1.0
OE2 C:GLU558 3.2 50.4 1.0
O3A C:AGS1005 3.2 59.0 1.0
CB C:THR500 3.4 50.9 1.0
O3B C:AGS1005 3.4 59.0 1.0
S1G C:AGS1005 3.4 59.0 1.0
CG2 C:THR522 3.6 57.7 1.0
CD C:GLU558 4.0 50.4 1.0
OE1 C:GLU558 4.1 50.4 1.0
CA C:THR522 4.2 57.7 1.0
CG2 C:THR500 4.2 50.9 1.0
N C:THR522 4.3 57.7 1.0
N C:THR500 4.4 50.9 1.0
O1B C:AGS1005 4.4 59.0 1.0
CA C:THR500 4.4 50.9 1.0
O2G C:AGS1005 4.5 59.0 1.0
PA C:AGS1005 4.5 59.0 1.0
O2A C:AGS1005 4.8 59.0 1.0
O1A C:AGS1005 4.9 59.0 1.0

Magnesium binding site 9 out of 11 in 7wae

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Magnesium binding site 9 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1001

b:70.3
occ:1.00
 OD1 D:ASN266 2.4 98.9 1.0
OD1 D:ASN452 2.7 50.5 1.0
OE2 D:GLU450 2.7 56.1 1.0
O2G D:AGS1004 2.8 81.3 1.0
OE1 D:GLU450 2.9 56.1 1.0
O3G D:AGS1004 3.2 81.3 1.0
CD D:GLU450 3.2 56.1 1.0
O2B D:AGS1004 3.2 81.3 1.0
CG D:ASN266 3.3 98.9 1.0
PG D:AGS1004 3.6 81.3 1.0
ND2 D:ASN266 3.8 98.9 1.0
CG D:ASN452 3.8 50.5 1.0
OXT K:ARG102 4.2 87.0 1.0
MG D:MG1002 4.2 69.5 1.0
PB D:AGS1004 4.5 81.3 1.0
ND2 D:ASN452 4.5 50.5 1.0
O3B D:AGS1004 4.5 81.3 1.0
CB D:ASN266 4.5 98.9 1.0
CG D:GLU450 4.7 56.1 1.0
CA D:ASN266 4.7 98.9 1.0
O1A D:AGS1004 4.7 81.3 1.0
N D:HIS267 4.8 98.4 1.0
CE D:LYS220 5.0 62.6 1.0
CB D:ASN452 5.0 50.5 1.0

Magnesium binding site 10 out of 11 in 7wae

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Magnesium binding site 10 out of 11 in the Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Trichodesmium Erythraeum Cyanophycin Synthetase 1 (TECPHA1) with Atpgammas, 4X(Beta-Asp-Arg), and Aspartate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1002

b:69.5
occ:1.00
 O3G D:AGS1004 2.1 81.3 1.0
OD2 D:ASP431 2.1 52.5 1.0
OE2 D:GLU450 2.4 56.1 1.0
PG D:AGS1004 3.1 81.3 1.0
CG D:ASP431 3.1 52.5 1.0
S1G D:AGS1004 3.1 81.3 1.0
NH2 D:ARG323 3.3 68.4 1.0
O1A D:AGS1004 3.3 81.3 1.0
CD D:GLU450 3.5 56.1 1.0
OD1 D:ASP431 3.7 52.5 1.0
O2G D:AGS1004 3.9 81.3 1.0
NH2 D:ARG309 4.0 51.9 1.0
CG D:GLU450 4.0 56.1 1.0
ND2 D:ASN452 4.2 50.5 1.0
CB D:ASP431 4.2 52.5 1.0
MG D:MG1001 4.2 70.3 1.0
O3B D:AGS1004 4.3 81.3 1.0
O2B D:AGS1004 4.3 81.3 1.0
O3' D:AGS1004 4.3 81.3 1.0
CZ D:ARG323 4.4 68.4 1.0
OD1 D:ASN452 4.5 50.5 1.0
OE1 D:GLU450 4.6 56.1 1.0
NH1 D:ARG323 4.6 68.4 1.0
PA D:AGS1004 4.7 81.3 1.0
CG D:ASN452 4.7 50.5 1.0
C5' D:AGS1004 4.9 81.3 1.0
PB D:AGS1004 5.0 81.3 1.0

Reference:

T.Miyakawa, J.Yang, M.Kawasaki, N.Adachi, A.Fujii, Y.Miyauchi, T.Muramatsu, T.Moriya, T.Senda, M.Tanokura. Structural Bases For Aspartate Recognition and Polymerization Efficiency of Cyanobacterial Cyanophycin Synthetase. Nat Commun V. 13 5097 2022.
ISSN: ESSN 2041-1723
PubMed: 36042318
DOI: 10.1038/S41467-022-32834-8
Page generated: Thu Oct 3 11:13:24 2024

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