Magnesium in PDB 7wlm: The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
39;
Binding sites:
The binding sites of Magnesium atom in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
(pdb code 7wlm). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 39 binding sites of Magnesium where determined in the
The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II, PDB code: 7wlm:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 1 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:7.6
occ:1.00
|
MG
|
A:CHL601
|
0.0
|
7.6
|
1.0
|
O
|
A:TRP11
|
1.9
|
11.6
|
1.0
|
ND
|
A:CHL601
|
2.1
|
7.6
|
1.0
|
NB
|
A:CHL601
|
2.1
|
7.6
|
1.0
|
NA
|
A:CHL601
|
2.1
|
7.6
|
1.0
|
NC
|
A:CHL601
|
2.1
|
7.6
|
1.0
|
C4D
|
A:CHL601
|
3.0
|
7.6
|
1.0
|
C4A
|
A:CHL601
|
3.0
|
7.6
|
1.0
|
C1B
|
A:CHL601
|
3.0
|
7.6
|
1.0
|
C
|
A:TRP11
|
3.1
|
11.6
|
1.0
|
C1C
|
A:CHL601
|
3.1
|
7.6
|
1.0
|
C1A
|
A:CHL601
|
3.1
|
7.6
|
1.0
|
C4B
|
A:CHL601
|
3.2
|
7.6
|
1.0
|
C4C
|
A:CHL601
|
3.2
|
7.6
|
1.0
|
C1D
|
A:CHL601
|
3.2
|
7.6
|
1.0
|
CHB
|
A:CHL601
|
3.3
|
7.6
|
1.0
|
CHA
|
A:CHL601
|
3.4
|
7.6
|
1.0
|
CHC
|
A:CHL601
|
3.5
|
7.6
|
1.0
|
CHD
|
A:CHL601
|
3.6
|
7.6
|
1.0
|
CA
|
A:TRP11
|
3.9
|
11.6
|
1.0
|
N
|
A:LEU12
|
4.1
|
14.0
|
1.0
|
C3D
|
A:CHL601
|
4.2
|
7.6
|
1.0
|
CA
|
A:LEU12
|
4.2
|
14.0
|
1.0
|
C10
|
A:LHG617
|
4.2
|
17.6
|
1.0
|
C2B
|
A:CHL601
|
4.3
|
7.6
|
1.0
|
C3A
|
A:CHL601
|
4.3
|
7.6
|
1.0
|
C2D
|
A:CHL601
|
4.3
|
7.6
|
1.0
|
C3B
|
A:CHL601
|
4.3
|
7.6
|
1.0
|
C2C
|
A:CHL601
|
4.3
|
7.6
|
1.0
|
C3C
|
A:CHL601
|
4.4
|
7.6
|
1.0
|
C2A
|
A:CHL601
|
4.4
|
7.6
|
1.0
|
CB
|
A:TRP11
|
4.4
|
11.6
|
1.0
|
C8
|
A:LHG617
|
4.4
|
17.6
|
1.0
|
C
|
A:LEU12
|
4.8
|
14.0
|
1.0
|
CBD
|
A:CHL601
|
4.9
|
7.6
|
1.0
|
CD2
|
A:LEU12
|
4.9
|
14.0
|
1.0
|
N
|
A:GLY13
|
4.9
|
13.9
|
1.0
|
C9
|
A:LHG617
|
5.0
|
17.6
|
1.0
|
|
Magnesium binding site 2 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 2 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg602
b:15.3
occ:1.00
|
MG
|
A:CHL602
|
0.0
|
15.3
|
1.0
|
OE2
|
A:GLU53
|
2.0
|
5.8
|
1.0
|
ND
|
A:CHL602
|
2.1
|
15.3
|
1.0
|
NB
|
A:CHL602
|
2.1
|
15.3
|
1.0
|
NA
|
A:CHL602
|
2.1
|
15.3
|
1.0
|
NC
|
A:CHL602
|
2.1
|
15.3
|
1.0
|
C4D
|
A:CHL602
|
3.0
|
15.3
|
1.0
|
CD
|
A:GLU53
|
3.0
|
5.8
|
1.0
|
C4A
|
A:CHL602
|
3.0
|
15.3
|
1.0
|
C1B
|
A:CHL602
|
3.0
|
15.3
|
1.0
|
C1C
|
A:CHL602
|
3.1
|
15.3
|
1.0
|
C1A
|
A:CHL602
|
3.1
|
15.3
|
1.0
|
C4B
|
A:CHL602
|
3.2
|
15.3
|
1.0
|
C4C
|
A:CHL602
|
3.2
|
15.3
|
1.0
|
C1D
|
A:CHL602
|
3.2
|
15.3
|
1.0
|
CHB
|
A:CHL602
|
3.3
|
15.3
|
1.0
|
CHA
|
A:CHL602
|
3.4
|
15.3
|
1.0
|
CHC
|
A:CHL602
|
3.5
|
15.3
|
1.0
|
CHD
|
A:CHL602
|
3.6
|
15.3
|
1.0
|
OE1
|
A:GLU53
|
3.7
|
5.8
|
1.0
|
CG
|
A:GLU53
|
3.8
|
5.8
|
1.0
|
C41
|
A:0IE616
|
3.9
|
15.3
|
1.0
|
NE
|
A:ARG174
|
4.1
|
3.7
|
1.0
|
C3D
|
A:CHL602
|
4.2
|
15.3
|
1.0
|
NH2
|
A:ARG174
|
4.2
|
3.7
|
1.0
|
C2B
|
A:CHL602
|
4.3
|
15.3
|
1.0
|
C3A
|
A:CHL602
|
4.3
|
15.3
|
1.0
|
C2D
|
A:CHL602
|
4.3
|
15.3
|
1.0
|
C3B
|
A:CHL602
|
4.3
|
15.3
|
1.0
|
C2C
|
A:CHL602
|
4.3
|
15.3
|
1.0
|
C3C
|
A:CHL602
|
4.4
|
15.3
|
1.0
|
C2A
|
A:CHL602
|
4.4
|
15.3
|
1.0
|
CZ
|
A:ARG174
|
4.5
|
3.7
|
1.0
|
CB
|
A:GLU53
|
4.6
|
5.8
|
1.0
|
CBD
|
A:CHL602
|
4.9
|
15.3
|
1.0
|
CD
|
A:ARG174
|
4.9
|
3.7
|
1.0
|
CG
|
A:ARG174
|
5.0
|
3.7
|
1.0
|
|
Magnesium binding site 3 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 3 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg603
b:5.7
occ:1.00
|
MG
|
A:CLA603
|
0.0
|
5.7
|
1.0
|
NE2
|
A:HIS56
|
1.9
|
4.0
|
1.0
|
NB
|
A:CLA603
|
2.0
|
5.7
|
1.0
|
ND
|
A:CLA603
|
2.0
|
5.7
|
1.0
|
NA
|
A:CLA603
|
2.0
|
5.7
|
1.0
|
NC
|
A:CLA603
|
2.0
|
5.7
|
1.0
|
CE1
|
A:HIS56
|
2.7
|
4.0
|
1.0
|
C4D
|
A:CLA603
|
2.9
|
5.7
|
1.0
|
C1C
|
A:CLA603
|
3.0
|
5.7
|
1.0
|
C4A
|
A:CLA603
|
3.0
|
5.7
|
1.0
|
C1A
|
A:CLA603
|
3.0
|
5.7
|
1.0
|
C1B
|
A:CLA603
|
3.1
|
5.7
|
1.0
|
CD2
|
A:HIS56
|
3.1
|
4.0
|
1.0
|
C4B
|
A:CLA603
|
3.1
|
5.7
|
1.0
|
C4C
|
A:CLA603
|
3.1
|
5.7
|
1.0
|
C1D
|
A:CLA603
|
3.1
|
5.7
|
1.0
|
CHA
|
A:CLA603
|
3.4
|
5.7
|
1.0
|
CHB
|
A:CLA603
|
3.4
|
5.7
|
1.0
|
CHC
|
A:CLA603
|
3.4
|
5.7
|
1.0
|
CHD
|
A:CLA603
|
3.6
|
5.7
|
1.0
|
ND1
|
A:HIS56
|
3.9
|
4.0
|
1.0
|
C10
|
A:CHL609
|
4.0
|
4.8
|
1.0
|
CG
|
A:HIS56
|
4.1
|
4.0
|
1.0
|
C3D
|
A:CLA603
|
4.2
|
5.7
|
1.0
|
C9
|
A:CHL609
|
4.2
|
4.8
|
1.0
|
C2B
|
A:CLA603
|
4.2
|
5.7
|
1.0
|
C3B
|
A:CLA603
|
4.2
|
5.7
|
1.0
|
C2D
|
A:CLA603
|
4.3
|
5.7
|
1.0
|
C2C
|
A:CLA603
|
4.3
|
5.7
|
1.0
|
C3C
|
A:CLA603
|
4.3
|
5.7
|
1.0
|
C2A
|
A:CLA603
|
4.3
|
5.7
|
1.0
|
C3A
|
A:CLA603
|
4.3
|
5.7
|
1.0
|
C8
|
A:CHL609
|
4.5
|
4.8
|
1.0
|
C7
|
A:CHL609
|
4.7
|
4.8
|
1.0
|
CBD
|
A:CLA603
|
4.9
|
5.7
|
1.0
|
|
Magnesium binding site 4 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 4 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg604
b:20.7
occ:1.00
|
MG
|
A:CLA604
|
0.0
|
20.7
|
1.0
|
NB
|
A:CLA604
|
1.9
|
20.7
|
1.0
|
ND
|
A:CLA604
|
2.0
|
20.7
|
1.0
|
NA
|
A:CLA604
|
2.0
|
20.7
|
1.0
|
NC
|
A:CLA604
|
2.0
|
20.7
|
1.0
|
O
|
A:HOH704
|
2.1
|
13.6
|
1.0
|
C4D
|
A:CLA604
|
2.9
|
20.7
|
1.0
|
C4A
|
A:CLA604
|
3.0
|
20.7
|
1.0
|
C1C
|
A:CLA604
|
3.0
|
20.7
|
1.0
|
C1A
|
A:CLA604
|
3.0
|
20.7
|
1.0
|
C1B
|
A:CLA604
|
3.0
|
20.7
|
1.0
|
C4B
|
A:CLA604
|
3.1
|
20.7
|
1.0
|
C1D
|
A:CLA604
|
3.1
|
20.7
|
1.0
|
C4C
|
A:CLA604
|
3.1
|
20.7
|
1.0
|
CHA
|
A:CLA604
|
3.4
|
20.7
|
1.0
|
CHB
|
A:CLA604
|
3.4
|
20.7
|
1.0
|
CHC
|
A:CLA604
|
3.4
|
20.7
|
1.0
|
CHD
|
A:CLA604
|
3.5
|
20.7
|
1.0
|
O23
|
A:NEX614
|
3.9
|
26.2
|
1.0
|
C24
|
A:NEX614
|
4.0
|
26.2
|
1.0
|
C3D
|
A:CLA604
|
4.1
|
20.7
|
1.0
|
C2B
|
A:CLA604
|
4.2
|
20.7
|
1.0
|
O
|
A:GLY66
|
4.2
|
16.6
|
1.0
|
C2D
|
A:CLA604
|
4.2
|
20.7
|
1.0
|
C3B
|
A:CLA604
|
4.2
|
20.7
|
1.0
|
C3A
|
A:CLA604
|
4.3
|
20.7
|
1.0
|
C2C
|
A:CLA604
|
4.3
|
20.7
|
1.0
|
C2A
|
A:CLA604
|
4.3
|
20.7
|
1.0
|
C3C
|
A:CLA604
|
4.3
|
20.7
|
1.0
|
C23
|
A:NEX614
|
4.4
|
26.2
|
1.0
|
O
|
A:HOH713
|
4.5
|
13.2
|
1.0
|
CA
|
A:GLY66
|
4.6
|
16.6
|
1.0
|
C22
|
A:NEX614
|
4.7
|
26.2
|
1.0
|
CAA
|
A:CLA604
|
4.9
|
20.7
|
1.0
|
CG
|
A:PRO70
|
4.9
|
25.7
|
1.0
|
C
|
A:GLY66
|
4.9
|
16.6
|
1.0
|
CBD
|
A:CLA604
|
4.9
|
20.7
|
1.0
|
CMA
|
A:CLA604
|
4.9
|
20.7
|
1.0
|
C35
|
A:0IE616
|
5.0
|
15.3
|
1.0
|
|
Magnesium binding site 5 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 5 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg605
b:38.1
occ:1.00
|
MG
|
A:CHL605
|
0.0
|
38.1
|
1.0
|
NB
|
A:CHL605
|
2.1
|
38.1
|
1.0
|
ND
|
A:CHL605
|
2.1
|
38.1
|
1.0
|
NA
|
A:CHL605
|
2.1
|
38.1
|
1.0
|
NC
|
A:CHL605
|
2.1
|
38.1
|
1.0
|
O
|
A:VAL108
|
2.1
|
34.0
|
1.0
|
C4D
|
A:CHL605
|
3.0
|
38.1
|
1.0
|
C4A
|
A:CHL605
|
3.0
|
38.1
|
1.0
|
C1B
|
A:CHL605
|
3.0
|
38.1
|
1.0
|
C1C
|
A:CHL605
|
3.1
|
38.1
|
1.0
|
C1A
|
A:CHL605
|
3.1
|
38.1
|
1.0
|
C4B
|
A:CHL605
|
3.2
|
38.1
|
1.0
|
C4C
|
A:CHL605
|
3.2
|
38.1
|
1.0
|
C1D
|
A:CHL605
|
3.2
|
38.1
|
1.0
|
C
|
A:VAL108
|
3.3
|
34.0
|
1.0
|
CHB
|
A:CHL605
|
3.3
|
38.1
|
1.0
|
CHA
|
A:CHL605
|
3.4
|
38.1
|
1.0
|
CHC
|
A:CHL605
|
3.6
|
38.1
|
1.0
|
CHD
|
A:CHL605
|
3.6
|
38.1
|
1.0
|
CA
|
A:VAL108
|
4.0
|
34.0
|
1.0
|
O
|
A:HIS109
|
4.2
|
36.2
|
1.0
|
C
|
A:HIS109
|
4.2
|
36.2
|
1.0
|
C3D
|
A:CHL605
|
4.2
|
38.1
|
1.0
|
C2B
|
A:CHL605
|
4.3
|
38.1
|
1.0
|
C3A
|
A:CHL605
|
4.3
|
38.1
|
1.0
|
C2D
|
A:CHL605
|
4.3
|
38.1
|
1.0
|
N
|
A:HIS109
|
4.3
|
36.2
|
1.0
|
C2C
|
A:CHL605
|
4.3
|
38.1
|
1.0
|
C3B
|
A:CHL605
|
4.3
|
38.1
|
1.0
|
C3C
|
A:CHL605
|
4.4
|
38.1
|
1.0
|
CG1
|
A:VAL108
|
4.4
|
34.0
|
1.0
|
C2A
|
A:CHL605
|
4.4
|
38.1
|
1.0
|
N
|
A:ALA110
|
4.5
|
34.1
|
1.0
|
CA
|
A:HIS109
|
4.6
|
36.2
|
1.0
|
CB
|
A:HIS109
|
4.6
|
36.2
|
1.0
|
O
|
A:LEU107
|
4.7
|
36.5
|
1.0
|
CA
|
A:ALA110
|
4.8
|
34.1
|
1.0
|
CB
|
A:VAL108
|
4.9
|
34.0
|
1.0
|
CBD
|
A:CHL605
|
4.9
|
38.1
|
1.0
|
CMA
|
A:CHL605
|
5.0
|
38.1
|
1.0
|
|
Magnesium binding site 6 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 6 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg606
b:16.5
occ:1.00
|
MG
|
A:CHL606
|
0.0
|
16.5
|
1.0
|
NB
|
A:CHL606
|
2.1
|
16.5
|
1.0
|
O
|
A:HOH712
|
2.1
|
15.4
|
1.0
|
NA
|
A:CHL606
|
2.1
|
16.5
|
1.0
|
ND
|
A:CHL606
|
2.1
|
16.5
|
1.0
|
NC
|
A:CHL606
|
2.1
|
16.5
|
1.0
|
C4D
|
A:CHL606
|
3.0
|
16.5
|
1.0
|
C4A
|
A:CHL606
|
3.0
|
16.5
|
1.0
|
C1B
|
A:CHL606
|
3.0
|
16.5
|
1.0
|
C1C
|
A:CHL606
|
3.1
|
16.5
|
1.0
|
C1A
|
A:CHL606
|
3.1
|
16.5
|
1.0
|
C4B
|
A:CHL606
|
3.2
|
16.5
|
1.0
|
C4C
|
A:CHL606
|
3.2
|
16.5
|
1.0
|
C1D
|
A:CHL606
|
3.2
|
16.5
|
1.0
|
CHB
|
A:CHL606
|
3.3
|
16.5
|
1.0
|
CHA
|
A:CHL606
|
3.4
|
16.5
|
1.0
|
CHC
|
A:CHL606
|
3.5
|
16.5
|
1.0
|
CHD
|
A:CHL606
|
3.6
|
16.5
|
1.0
|
OE1
|
A:GLN120
|
3.9
|
16.7
|
1.0
|
C3D
|
A:CHL606
|
4.2
|
16.5
|
1.0
|
C2B
|
A:CHL606
|
4.3
|
16.5
|
1.0
|
C3A
|
A:CHL606
|
4.3
|
16.5
|
1.0
|
O
|
A:HOH702
|
4.3
|
15.3
|
1.0
|
C2D
|
A:CHL606
|
4.3
|
16.5
|
1.0
|
C3B
|
A:CHL606
|
4.3
|
16.5
|
1.0
|
C38
|
A:NEX614
|
4.3
|
26.2
|
1.0
|
C2C
|
A:CHL606
|
4.3
|
16.5
|
1.0
|
C3C
|
A:CHL606
|
4.4
|
16.5
|
1.0
|
C2A
|
A:CHL606
|
4.4
|
16.5
|
1.0
|
CD
|
A:GLN120
|
4.4
|
16.7
|
1.0
|
CG2
|
A:ILE116
|
4.5
|
22.8
|
1.0
|
CBC
|
A:CHL607
|
4.6
|
16.1
|
1.0
|
CG
|
A:GLN120
|
4.8
|
16.7
|
1.0
|
CBD
|
A:CHL606
|
4.9
|
16.5
|
1.0
|
CB
|
A:GLN120
|
4.9
|
16.7
|
1.0
|
|
Magnesium binding site 7 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 7 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg607
b:16.1
occ:1.00
|
MG
|
A:CHL607
|
0.0
|
16.1
|
1.0
|
NB
|
A:CHL607
|
2.1
|
16.1
|
1.0
|
ND
|
A:CHL607
|
2.1
|
16.1
|
1.0
|
NA
|
A:CHL607
|
2.1
|
16.1
|
1.0
|
NC
|
A:CHL607
|
2.1
|
16.1
|
1.0
|
O
|
A:HOH706
|
2.1
|
15.0
|
1.0
|
C4D
|
A:CHL607
|
3.0
|
16.1
|
1.0
|
C4A
|
A:CHL607
|
3.0
|
16.1
|
1.0
|
C1B
|
A:CHL607
|
3.0
|
16.1
|
1.0
|
C1C
|
A:CHL607
|
3.1
|
16.1
|
1.0
|
C1A
|
A:CHL607
|
3.1
|
16.1
|
1.0
|
C4B
|
A:CHL607
|
3.2
|
16.1
|
1.0
|
C4C
|
A:CHL607
|
3.2
|
16.1
|
1.0
|
C1D
|
A:CHL607
|
3.2
|
16.1
|
1.0
|
CHB
|
A:CHL607
|
3.3
|
16.1
|
1.0
|
CHA
|
A:CHL607
|
3.4
|
16.1
|
1.0
|
CHC
|
A:CHL607
|
3.6
|
16.1
|
1.0
|
CHD
|
A:CHL607
|
3.6
|
16.1
|
1.0
|
O
|
A:HOH716
|
4.0
|
17.1
|
1.0
|
OMC
|
A:CHL606
|
4.1
|
16.5
|
1.0
|
C3D
|
A:CHL607
|
4.2
|
16.1
|
1.0
|
CMC
|
A:CHL606
|
4.3
|
16.5
|
1.0
|
C2B
|
A:CHL607
|
4.3
|
16.1
|
1.0
|
C2D
|
A:CHL607
|
4.3
|
16.1
|
1.0
|
C3A
|
A:CHL607
|
4.3
|
16.1
|
1.0
|
C3B
|
A:CHL607
|
4.3
|
16.1
|
1.0
|
C2C
|
A:CHL607
|
4.4
|
16.1
|
1.0
|
C2A
|
A:CHL607
|
4.4
|
16.1
|
1.0
|
C3C
|
A:CHL607
|
4.4
|
16.1
|
1.0
|
CBD
|
A:CHL607
|
4.9
|
16.1
|
1.0
|
|
Magnesium binding site 8 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 8 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg608
b:15.7
occ:1.00
|
MG
|
A:CHL608
|
0.0
|
15.7
|
1.0
|
ND
|
A:CHL608
|
2.1
|
15.7
|
1.0
|
NB
|
A:CHL608
|
2.1
|
15.7
|
1.0
|
NA
|
A:CHL608
|
2.1
|
15.7
|
1.0
|
NC
|
A:CHL608
|
2.1
|
15.7
|
1.0
|
O
|
A:HOH707
|
2.1
|
11.1
|
1.0
|
C4D
|
A:CHL608
|
3.0
|
15.7
|
1.0
|
C4A
|
A:CHL608
|
3.0
|
15.7
|
1.0
|
C1B
|
A:CHL608
|
3.0
|
15.7
|
1.0
|
C1C
|
A:CHL608
|
3.1
|
15.7
|
1.0
|
C1A
|
A:CHL608
|
3.1
|
15.7
|
1.0
|
C4B
|
A:CHL608
|
3.2
|
15.7
|
1.0
|
C4C
|
A:CHL608
|
3.2
|
15.7
|
1.0
|
C1D
|
A:CHL608
|
3.2
|
15.7
|
1.0
|
CHB
|
A:CHL608
|
3.3
|
15.7
|
1.0
|
CHA
|
A:CHL608
|
3.4
|
15.7
|
1.0
|
CHC
|
A:CHL608
|
3.5
|
15.7
|
1.0
|
CZ
|
A:PHE150
|
3.6
|
19.8
|
1.0
|
CHD
|
A:CHL608
|
3.6
|
15.7
|
1.0
|
CE2
|
A:PHE150
|
3.9
|
19.8
|
1.0
|
O
|
A:HOH703
|
4.0
|
10.4
|
1.0
|
C3D
|
A:CHL608
|
4.2
|
15.7
|
1.0
|
O
|
A:ALA127
|
4.2
|
12.2
|
1.0
|
C2B
|
A:CHL608
|
4.3
|
15.7
|
1.0
|
C3A
|
A:CHL608
|
4.3
|
15.7
|
1.0
|
C2D
|
A:CHL608
|
4.3
|
15.7
|
1.0
|
C3B
|
A:CHL608
|
4.3
|
15.7
|
1.0
|
C2C
|
A:CHL608
|
4.3
|
15.7
|
1.0
|
C3C
|
A:CHL608
|
4.4
|
15.7
|
1.0
|
C2A
|
A:CHL608
|
4.4
|
15.7
|
1.0
|
CB
|
A:ARG131
|
4.5
|
11.0
|
1.0
|
CE1
|
A:PHE150
|
4.5
|
19.8
|
1.0
|
CBD
|
A:CHL608
|
4.9
|
15.7
|
1.0
|
CB
|
A:ALA127
|
4.9
|
12.2
|
1.0
|
C
|
A:ALA127
|
5.0
|
12.2
|
1.0
|
CA
|
A:ARG131
|
5.0
|
11.0
|
1.0
|
|
Magnesium binding site 9 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 9 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg609
b:4.8
occ:1.00
|
MG
|
A:CHL609
|
0.0
|
4.8
|
1.0
|
NA
|
A:CHL609
|
2.1
|
4.8
|
1.0
|
ND
|
A:CHL609
|
2.1
|
4.8
|
1.0
|
NB
|
A:CHL609
|
2.1
|
4.8
|
1.0
|
NC
|
A:CHL609
|
2.1
|
4.8
|
1.0
|
OE2
|
A:GLU128
|
2.1
|
12.1
|
1.0
|
C4D
|
A:CHL609
|
3.0
|
4.8
|
1.0
|
C4A
|
A:CHL609
|
3.0
|
4.8
|
1.0
|
C1B
|
A:CHL609
|
3.0
|
4.8
|
1.0
|
C1C
|
A:CHL609
|
3.1
|
4.8
|
1.0
|
C1A
|
A:CHL609
|
3.1
|
4.8
|
1.0
|
C4B
|
A:CHL609
|
3.2
|
4.8
|
1.0
|
C4C
|
A:CHL609
|
3.2
|
4.8
|
1.0
|
C1D
|
A:CHL609
|
3.2
|
4.8
|
1.0
|
CD
|
A:GLU128
|
3.2
|
12.1
|
1.0
|
CHB
|
A:CHL609
|
3.3
|
4.8
|
1.0
|
CHA
|
A:CHL609
|
3.4
|
4.8
|
1.0
|
CHC
|
A:CHL609
|
3.5
|
4.8
|
1.0
|
CHD
|
A:CHL609
|
3.6
|
4.8
|
1.0
|
CG
|
A:GLU128
|
3.7
|
12.1
|
1.0
|
C3D
|
A:CHL609
|
4.2
|
4.8
|
1.0
|
OE1
|
A:GLU128
|
4.3
|
12.1
|
1.0
|
C2B
|
A:CHL609
|
4.3
|
4.8
|
1.0
|
C3A
|
A:CHL609
|
4.3
|
4.8
|
1.0
|
C2D
|
A:CHL609
|
4.3
|
4.8
|
1.0
|
C3B
|
A:CHL609
|
4.3
|
4.8
|
1.0
|
C2C
|
A:CHL609
|
4.3
|
4.8
|
1.0
|
C3C
|
A:CHL609
|
4.4
|
4.8
|
1.0
|
NH2
|
A:ARG131
|
4.4
|
11.0
|
1.0
|
C2A
|
A:CHL609
|
4.4
|
4.8
|
1.0
|
O
|
A:HOH711
|
4.5
|
11.5
|
1.0
|
C2
|
B:CHL601
|
4.6
|
7.7
|
1.0
|
CB
|
A:GLU128
|
4.6
|
12.1
|
1.0
|
C1
|
B:CHL601
|
4.7
|
7.7
|
1.0
|
CMD
|
A:CLA603
|
4.7
|
5.7
|
1.0
|
C6
|
B:CHL601
|
4.9
|
7.7
|
1.0
|
CBD
|
A:CHL609
|
4.9
|
4.8
|
1.0
|
|
Magnesium binding site 10 out
of 39 in 7wlm
Go back to
Magnesium Binding Sites List in 7wlm
Magnesium binding site 10 out
of 39 in the The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of The Cryo-Em Structure of Siphonaxanthin Chlorophyll A/B Type Light- Harvesting Complex II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg610
b:10.8
occ:1.00
|
MG
|
A:CHL610
|
0.0
|
10.8
|
1.0
|
NB
|
A:CHL610
|
2.1
|
10.8
|
1.0
|
ND
|
A:CHL610
|
2.1
|
10.8
|
1.0
|
NA
|
A:CHL610
|
2.1
|
10.8
|
1.0
|
NC
|
A:CHL610
|
2.1
|
10.8
|
1.0
|
OE2
|
A:GLU169
|
2.1
|
7.2
|
1.0
|
C4A
|
A:CHL610
|
3.0
|
10.8
|
1.0
|
C4D
|
A:CHL610
|
3.0
|
10.8
|
1.0
|
C1B
|
A:CHL610
|
3.0
|
10.8
|
1.0
|
C1C
|
A:CHL610
|
3.1
|
10.8
|
1.0
|
C1A
|
A:CHL610
|
3.1
|
10.8
|
1.0
|
CD
|
A:GLU169
|
3.1
|
7.2
|
1.0
|
C4B
|
A:CHL610
|
3.2
|
10.8
|
1.0
|
C4C
|
A:CHL610
|
3.2
|
10.8
|
1.0
|
C1D
|
A:CHL610
|
3.2
|
10.8
|
1.0
|
CHB
|
A:CHL610
|
3.3
|
10.8
|
1.0
|
CHA
|
A:CHL610
|
3.4
|
10.8
|
1.0
|
CHC
|
A:CHL610
|
3.5
|
10.8
|
1.0
|
CHD
|
A:CHL610
|
3.6
|
10.8
|
1.0
|
CG
|
A:GLU169
|
3.9
|
7.2
|
1.0
|
OE1
|
A:GLU169
|
4.0
|
7.2
|
1.0
|
C33
|
A:0UR615
|
4.2
|
14.8
|
1.0
|
NE
|
A:ARG58
|
4.2
|
5.4
|
1.0
|
O1A
|
A:CHL610
|
4.2
|
10.8
|
1.0
|
NH2
|
A:ARG58
|
4.2
|
5.4
|
1.0
|
C3D
|
A:CHL610
|
4.2
|
10.8
|
1.0
|
C2B
|
A:CHL610
|
4.3
|
10.8
|
1.0
|
C3A
|
A:CHL610
|
4.3
|
10.8
|
1.0
|
C2D
|
A:CHL610
|
4.3
|
10.8
|
1.0
|
C3B
|
A:CHL610
|
4.3
|
10.8
|
1.0
|
C2C
|
A:CHL610
|
4.3
|
10.8
|
1.0
|
C2A
|
A:CHL610
|
4.4
|
10.8
|
1.0
|
C3C
|
A:CHL610
|
4.4
|
10.8
|
1.0
|
CZ
|
A:ARG58
|
4.5
|
5.4
|
1.0
|
CB
|
A:GLU169
|
4.7
|
7.2
|
1.0
|
CGA
|
A:CHL610
|
4.9
|
10.8
|
1.0
|
CMA
|
A:CHL610
|
4.9
|
10.8
|
1.0
|
CBD
|
A:CHL610
|
4.9
|
10.8
|
1.0
|
|
Reference:
S.Seki,
G.Kurisu,
R.Fujii,
A.Kawamoto,
H.Tanaka.
Structural Insights Into Blue-Green Light Utilization By Marine Green Algal Light Harvesting Complex II at 2.78 A Bba Adv 2022.
ISSN: ESSN 2667-1603
DOI: 10.1016/J.BBADVA.2022.100064
Page generated: Thu Oct 3 11:20:53 2024
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