Magnesium in PDB 7wx3: Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph

All present enzymatic activity of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph:
1.2.1.41; 2.7.2.11;

The binding sites of Magnesium atom in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph (pdb code 7wx3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph, PDB code: 7wx3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:115.8 occ:1.00 OA3 A:RGP801 2.2 107.4 1.0 O2B A:ADP802 3.5 136.6 1.0 PA A:RGP801 3.6 107.4 1.0 OD2 A:ASP232 3.6 105.9 1.0 OE2 A:RGP801 4.0 107.4 1.0 OA2 A:RGP801 4.3 107.4 1.0 CG A:ASP232 4.3 105.9 1.0 CB A:ASP232 4.4 105.9 1.0 CB A:ASP234 4.4 95.1 1.0 O2A A:ADP802 4.5 136.6 1.0 OA1 A:RGP801 4.6 107.4 1.0 OG A:SER297 4.6 106.0 1.0 CE A:LYS298 4.6 102.0 1.0 NZ A:LYS62 4.7 78.2 1.0 OD1 A:ASP234 4.9 95.1 1.0 PB A:ADP802 5.0 136.6 1.0

Magnesium binding site 2 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg803 b:114.4 occ:1.00 OA3 B:RGP801 2.2 106.4 1.0 O2B B:ADP802 3.6 137.5 1.0 OD2 B:ASP232 3.6 105.5 1.0 PA B:RGP801 3.6 106.4 1.0 OE2 B:RGP801 4.1 106.4 1.0 OA2 B:RGP801 4.3 106.4 1.0 CG B:ASP232 4.3 105.5 1.0 CB B:ASP232 4.4 105.5 1.0 CB B:ASP234 4.4 95.5 1.0 O2A B:ADP802 4.5 137.5 1.0 OA1 B:RGP801 4.6 106.4 1.0 OG B:SER297 4.6 106.3 1.0 CE B:LYS298 4.6 102.7 1.0 NZ B:LYS62 4.7 78.3 1.0 OD1 B:ASP234 4.9 95.5 1.0 PB B:ADP802 5.0 137.5 1.0

Magnesium binding site 3 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg803 b:114.8 occ:1.00 OA3 C:RGP801 2.2 107.6 1.0 O3B C:ADP802 3.5 138.1 1.0 OD2 C:ASP232 3.6 106.1 1.0 PA C:RGP801 3.6 107.6 1.0 OE2 C:RGP801 4.1 107.6 1.0 OA1 C:RGP801 4.3 107.6 1.0 CG C:ASP232 4.3 106.1 1.0 CB C:ASP232 4.4 106.1 1.0 CB C:ASP234 4.4 96.0 1.0 O1A C:ADP802 4.5 138.1 1.0 OA2 C:RGP801 4.6 107.6 1.0 OG C:SER297 4.6 108.6 1.0 CE C:LYS298 4.6 104.1 1.0 NZ C:LYS62 4.7 78.5 1.0 OD1 C:ASP234 4.9 96.0 1.0 PB C:ADP802 5.0 138.1 1.0

Magnesium binding site 4 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg803 b:115.4 occ:1.00 OA3 D:RGP801 2.2 108.7 1.0 O3B D:ADP802 3.5 137.9 1.0 PA D:RGP801 3.6 108.7 1.0 OD2 D:ASP232 3.6 106.8 1.0 OE2 D:RGP801 4.0 108.7 1.0 OA1 D:RGP801 4.3 108.7 1.0 CG D:ASP232 4.4 106.8 1.0 CB D:ASP232 4.4 106.8 1.0 CB D:ASP234 4.4 96.2 1.0 O1A D:ADP802 4.5 137.9 1.0 OA2 D:RGP801 4.6 108.7 1.0 CE D:LYS298 4.6 103.4 1.0 OG D:SER297 4.6 107.6 1.0 NZ D:LYS62 4.7 78.4 1.0 OD1 D:ASP234 4.9 96.2 1.0 PB D:ADP802 5.0 137.9 1.0

J.Zhong, C.J.Guo, X.Zhou, C.C.Chang, B.Yin, T.Zhang, H.Hu, G.M.Lu, J.L.Liu. Structural Basis of Dynamic P5CS Filaments. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35286254
DOI: 10.7554/ELIFE.76107