Atomistry » Magnesium » PDB 7wc5-7wyi » 7wx3
Atomistry »
  Magnesium »
    PDB 7wc5-7wyi »
      7wx3 »

Magnesium in PDB 7wx3: Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph

Enzymatic activity of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph

All present enzymatic activity of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph:
1.2.1.41; 2.7.2.11;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph (pdb code 7wx3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph, PDB code: 7wx3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7wx3

Go back to Magnesium Binding Sites List in 7wx3
Magnesium binding site 1 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:115.8
occ:1.00
OA3 A:RGP801 2.2 107.4 1.0
O2B A:ADP802 3.5 136.6 1.0
PA A:RGP801 3.6 107.4 1.0
OD2 A:ASP232 3.6 105.9 1.0
OE2 A:RGP801 4.0 107.4 1.0
OA2 A:RGP801 4.3 107.4 1.0
CG A:ASP232 4.3 105.9 1.0
CB A:ASP232 4.4 105.9 1.0
CB A:ASP234 4.4 95.1 1.0
O2A A:ADP802 4.5 136.6 1.0
OA1 A:RGP801 4.6 107.4 1.0
OG A:SER297 4.6 106.0 1.0
CE A:LYS298 4.6 102.0 1.0
NZ A:LYS62 4.7 78.2 1.0
OD1 A:ASP234 4.9 95.1 1.0
PB A:ADP802 5.0 136.6 1.0

Magnesium binding site 2 out of 4 in 7wx3

Go back to Magnesium Binding Sites List in 7wx3
Magnesium binding site 2 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg803

b:114.4
occ:1.00
OA3 B:RGP801 2.2 106.4 1.0
O2B B:ADP802 3.6 137.5 1.0
OD2 B:ASP232 3.6 105.5 1.0
PA B:RGP801 3.6 106.4 1.0
OE2 B:RGP801 4.1 106.4 1.0
OA2 B:RGP801 4.3 106.4 1.0
CG B:ASP232 4.3 105.5 1.0
CB B:ASP232 4.4 105.5 1.0
CB B:ASP234 4.4 95.5 1.0
O2A B:ADP802 4.5 137.5 1.0
OA1 B:RGP801 4.6 106.4 1.0
OG B:SER297 4.6 106.3 1.0
CE B:LYS298 4.6 102.7 1.0
NZ B:LYS62 4.7 78.3 1.0
OD1 B:ASP234 4.9 95.5 1.0
PB B:ADP802 5.0 137.5 1.0

Magnesium binding site 3 out of 4 in 7wx3

Go back to Magnesium Binding Sites List in 7wx3
Magnesium binding site 3 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg803

b:114.8
occ:1.00
OA3 C:RGP801 2.2 107.6 1.0
O3B C:ADP802 3.5 138.1 1.0
OD2 C:ASP232 3.6 106.1 1.0
PA C:RGP801 3.6 107.6 1.0
OE2 C:RGP801 4.1 107.6 1.0
OA1 C:RGP801 4.3 107.6 1.0
CG C:ASP232 4.3 106.1 1.0
CB C:ASP232 4.4 106.1 1.0
CB C:ASP234 4.4 96.0 1.0
O1A C:ADP802 4.5 138.1 1.0
OA2 C:RGP801 4.6 107.6 1.0
OG C:SER297 4.6 108.6 1.0
CE C:LYS298 4.6 104.1 1.0
NZ C:LYS62 4.7 78.5 1.0
OD1 C:ASP234 4.9 96.0 1.0
PB C:ADP802 5.0 138.1 1.0

Magnesium binding site 4 out of 4 in 7wx3

Go back to Magnesium Binding Sites List in 7wx3
Magnesium binding site 4 out of 4 in the Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Gk Domain of Drosophila P5CS Filament with Glutamate, Atp, and Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg803

b:115.4
occ:1.00
OA3 D:RGP801 2.2 108.7 1.0
O3B D:ADP802 3.5 137.9 1.0
PA D:RGP801 3.6 108.7 1.0
OD2 D:ASP232 3.6 106.8 1.0
OE2 D:RGP801 4.0 108.7 1.0
OA1 D:RGP801 4.3 108.7 1.0
CG D:ASP232 4.4 106.8 1.0
CB D:ASP232 4.4 106.8 1.0
CB D:ASP234 4.4 96.2 1.0
O1A D:ADP802 4.5 137.9 1.0
OA2 D:RGP801 4.6 108.7 1.0
CE D:LYS298 4.6 103.4 1.0
OG D:SER297 4.6 107.6 1.0
NZ D:LYS62 4.7 78.4 1.0
OD1 D:ASP234 4.9 96.2 1.0
PB D:ADP802 5.0 137.9 1.0

Reference:

J.Zhong, C.J.Guo, X.Zhou, C.C.Chang, B.Yin, T.Zhang, H.Hu, G.M.Lu, J.L.Liu. Structural Basis of Dynamic P5CS Filaments. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35286254
DOI: 10.7554/ELIFE.76107
Page generated: Thu Oct 3 11:22:52 2024

Last articles

Na in 2Q92
Na in 2Q68
Na in 2Q69
Na in 2Q6E
Na in 2Q67
Na in 2Q3L
Na in 2Q3X
Na in 2PXI
Na in 2PUV
Na in 2Q1H
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy