Magnesium in PDB 7x54: A Cbg-Parm Filament with Adp

The binding sites of Magnesium atom in the A Cbg-Parm Filament with Adp (pdb code 7x54). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the A Cbg-Parm Filament with Adp, PDB code: 7x54:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:106.7 occ:1.00 O3B A:ADP300 2.1 112.4 1.0 PB A:ADP300 2.8 112.4 1.0 O2B A:ADP300 3.0 112.4 1.0 OE2 A:GLU132 3.0 117.0 1.0 O1B A:ADP300 3.3 112.4 1.0 OD2 A:ASP7 3.5 114.8 1.0 OD2 A:ASP153 3.8 114.8 1.0 CD A:GLU132 3.9 117.0 1.0 OD1 A:ASP7 4.1 114.8 1.0 CG A:GLU132 4.2 117.0 1.0 CG A:ASP7 4.2 114.8 1.0 O3A A:ADP300 4.2 112.4 1.0 NZ A:LYS14 4.6 112.7 1.0 O2A A:ADP300 4.7 112.4 1.0 CG A:ASP153 4.7 114.8 1.0 ND2 A:ASN272 4.7 116.4 1.0 CA A:GLY9 4.7 115.6 1.0 CA A:GLY155 4.8 113.1 1.0 OD1 A:ASP153 4.8 114.8 1.0 OE1 A:GLU132 4.9 117.0 1.0

Magnesium binding site 2 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:110.9 occ:1.00 O3B B:ADP300 2.1 113.5 1.0 PB B:ADP300 2.8 113.5 1.0 O2B B:ADP300 3.0 113.5 1.0 OE2 B:GLU132 3.0 116.3 1.0 O1B B:ADP300 3.3 113.5 1.0 OD2 B:ASP7 3.5 117.2 1.0 OD2 B:ASP153 3.8 115.4 1.0 CD B:GLU132 3.9 116.3 1.0 OD1 B:ASP7 4.1 117.2 1.0 CG B:GLU132 4.2 116.3 1.0 CG B:ASP7 4.2 117.2 1.0 O3A B:ADP300 4.2 113.5 1.0 NZ B:LYS14 4.6 115.0 1.0 O2A B:ADP300 4.7 113.5 1.0 CG B:ASP153 4.7 115.4 1.0 ND2 B:ASN272 4.7 117.5 1.0 CA B:GLY9 4.7 117.2 1.0 CA B:GLY155 4.8 111.8 1.0 OD1 B:ASP153 4.8 115.4 1.0 OE1 B:GLU132 4.9 116.3 1.0

Magnesium binding site 3 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:117.7 occ:1.00 O3B C:ADP300 2.1 112.5 1.0 PB C:ADP300 2.8 112.5 1.0 O2B C:ADP300 3.0 112.5 1.0 OE2 C:GLU132 3.0 114.8 1.0 O1B C:ADP300 3.3 112.5 1.0 OD2 C:ASP7 3.5 116.8 1.0 OD2 C:ASP153 3.8 113.5 1.0 CD C:GLU132 3.9 114.8 1.0 OD1 C:ASP7 4.1 116.8 1.0 CG C:GLU132 4.2 114.8 1.0 CG C:ASP7 4.2 116.8 1.0 O3A C:ADP300 4.2 112.5 1.0 NZ C:LYS14 4.6 113.7 1.0 O2A C:ADP300 4.7 112.5 1.0 CG C:ASP153 4.7 113.5 1.0 ND2 C:ASN272 4.7 115.8 1.0 CA C:GLY9 4.7 115.7 1.0 CA C:GLY155 4.8 112.4 1.0 OD1 C:ASP153 4.8 113.5 1.0 OE1 C:GLU132 4.9 114.8 1.0

Magnesium binding site 4 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:114.6 occ:1.00 O3B D:ADP300 2.1 110.7 1.0 PB D:ADP300 2.8 110.7 1.0 O2B D:ADP300 3.0 110.7 1.0 OE2 D:GLU132 3.0 113.3 1.0 O1B D:ADP300 3.3 110.7 1.0 OD2 D:ASP7 3.5 115.5 1.0 OD2 D:ASP153 3.8 113.5 1.0 CD D:GLU132 3.9 113.3 1.0 OD1 D:ASP7 4.1 115.5 1.0 CG D:GLU132 4.2 113.3 1.0 CG D:ASP7 4.2 115.5 1.0 O3A D:ADP300 4.2 110.7 1.0 NZ D:LYS14 4.6 112.0 1.0 O2A D:ADP300 4.7 110.7 1.0 CG D:ASP153 4.7 113.5 1.0 ND2 D:ASN272 4.7 114.0 1.0 CA D:GLY9 4.7 116.3 1.0 CA D:GLY155 4.8 110.2 1.0 OD1 D:ASP153 4.8 113.5 1.0 OE1 D:GLU132 4.9 113.3 1.0

Magnesium binding site 5 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg301 b:115.7 occ:1.00 O3B E:ADP300 2.1 111.8 1.0 PB E:ADP300 2.8 111.8 1.0 O2B E:ADP300 3.0 111.8 1.0 OE2 E:GLU132 3.0 117.5 1.0 O1B E:ADP300 3.3 111.8 1.0 OD2 E:ASP7 3.5 116.7 1.0 OD2 E:ASP153 3.8 115.2 1.0 CD E:GLU132 3.9 117.5 1.0 OD1 E:ASP7 4.1 116.7 1.0 CG E:GLU132 4.2 117.5 1.0 CG E:ASP7 4.2 116.7 1.0 O3A E:ADP300 4.2 111.8 1.0 NZ E:LYS14 4.6 113.2 1.0 O2A E:ADP300 4.7 111.8 1.0 CG E:ASP153 4.7 115.2 1.0 ND2 E:ASN272 4.7 117.4 1.0 CA E:GLY9 4.7 115.7 1.0 CA E:GLY155 4.8 111.8 1.0 OD1 E:ASP153 4.8 115.2 1.0 OE1 E:GLU132 4.9 117.5 1.0

A.Koh, S.Ali, D.Popp, K.Tanaka, Y.Kitaoku, N.Miyazaki, K.Iwasaki, K.Mitsuoka, R.Robert, A.Narita. A New Actin-Like Filament From Clostridium Botulinum Exhibits A New System of Filament Turn Over To Be Published.