Magnesium in PDB 7x56: A Cbg-Parm Filament with Adp

The binding sites of Magnesium atom in the A Cbg-Parm Filament with Adp (pdb code 7x56). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the A Cbg-Parm Filament with Adp, PDB code: 7x56:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:46.8 occ:1.00 O1B A:GDP300 2.0 48.3 1.0 OE2 A:GLU132 2.8 51.9 1.0 PB A:GDP300 3.3 48.3 1.0 OD2 A:ASP7 3.4 53.4 1.0 O2B A:GDP300 3.5 48.3 1.0 OD2 A:ASP153 3.7 50.0 1.0 CD A:GLU132 3.8 51.9 1.0 OD1 A:ASP7 4.1 53.4 1.0 CG A:ASP7 4.2 53.4 1.0 O3A A:GDP300 4.3 48.3 1.0 O3B A:GDP300 4.3 48.3 1.0 NZ A:LYS14 4.5 51.6 1.0 OE1 A:GLU132 4.5 51.9 1.0 CG A:GLU132 4.6 51.9 1.0 ND2 A:ASN272 4.7 54.4 1.0 CG A:ASP153 4.7 50.0 1.0 O1A A:GDP300 4.7 48.3 1.0 CA A:GLY155 4.8 47.1 1.0 OD1 A:ASP153 4.8 50.0 1.0 NZ A:LYS61 5.0 52.2 1.0

Magnesium binding site 2 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:46.7 occ:1.00 O1B B:GDP300 2.0 48.5 1.0 OE2 B:GLU132 2.8 50.8 1.0 PB B:GDP300 3.3 48.5 1.0 OD2 B:ASP7 3.4 52.4 1.0 O2B B:GDP300 3.5 48.5 1.0 OD2 B:ASP153 3.7 50.2 1.0 CD B:GLU132 3.8 50.8 1.0 OD1 B:ASP7 4.1 52.4 1.0 CG B:ASP7 4.2 52.4 1.0 O3A B:GDP300 4.3 48.5 1.0 O3B B:GDP300 4.3 48.5 1.0 NZ B:LYS14 4.5 51.6 1.0 OE1 B:GLU132 4.5 50.8 1.0 CG B:GLU132 4.6 50.8 1.0 ND2 B:ASN272 4.7 53.5 1.0 CG B:ASP153 4.7 50.2 1.0 O1A B:GDP300 4.7 48.5 1.0 CA B:GLY155 4.8 47.7 1.0 OD1 B:ASP153 4.8 50.2 1.0 NZ B:LYS61 5.0 51.4 1.0

Magnesium binding site 3 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:44.9 occ:1.00 O1B C:GDP300 2.0 47.9 1.0 OE2 C:GLU132 2.8 50.5 1.0 PB C:GDP300 3.3 47.9 1.0 OD2 C:ASP7 3.4 51.7 1.0 O2B C:GDP300 3.5 47.9 1.0 OD2 C:ASP153 3.7 49.0 1.0 CD C:GLU132 3.8 50.5 1.0 OD1 C:ASP7 4.1 51.7 1.0 CG C:ASP7 4.2 51.7 1.0 O3A C:GDP300 4.3 47.9 1.0 O3B C:GDP300 4.3 47.9 1.0 NZ C:LYS14 4.5 51.1 1.0 OE1 C:GLU132 4.5 50.5 1.0 CG C:GLU132 4.6 50.5 1.0 ND2 C:ASN272 4.7 51.9 1.0 CG C:ASP153 4.7 49.0 1.0 O1A C:GDP300 4.7 47.9 1.0 CA C:GLY155 4.8 46.0 1.0 OD1 C:ASP153 4.8 49.0 1.0 NZ C:LYS61 5.0 51.5 1.0

Magnesium binding site 4 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:48.8 occ:1.00 O1B D:GDP300 2.0 49.5 1.0 OE2 D:GLU132 2.8 51.5 1.0 PB D:GDP300 3.3 49.5 1.0 OD2 D:ASP7 3.4 53.2 1.0 O2B D:GDP300 3.5 49.5 1.0 OD2 D:ASP153 3.7 49.0 1.0 CD D:GLU132 3.8 51.5 1.0 OD1 D:ASP7 4.1 53.2 1.0 CG D:ASP7 4.2 53.2 1.0 O3A D:GDP300 4.3 49.5 1.0 O3B D:GDP300 4.3 49.5 1.0 NZ D:LYS14 4.5 52.3 1.0 OE1 D:GLU132 4.5 51.5 1.0 CG D:GLU132 4.6 51.5 1.0 ND2 D:ASN272 4.7 53.4 1.0 CG D:ASP153 4.7 49.0 1.0 O1A D:GDP300 4.7 49.5 1.0 CA D:GLY155 4.8 46.5 1.0 OD1 D:ASP153 4.8 49.0 1.0 NZ D:LYS61 5.0 52.0 1.0

Magnesium binding site 5 out of 5 in the A Cbg-Parm Filament with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of A Cbg-Parm Filament with Adp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg301 b:45.6 occ:1.00 O1B E:GDP300 2.0 49.2 1.0 OE2 E:GLU132 2.8 51.1 1.0 PB E:GDP300 3.3 49.2 1.0 OD2 E:ASP7 3.4 52.4 1.0 O2B E:GDP300 3.5 49.2 1.0 OD2 E:ASP153 3.7 50.3 1.0 CD E:GLU132 3.8 51.1 1.0 OD1 E:ASP7 4.1 52.4 1.0 CG E:ASP7 4.2 52.4 1.0 O3A E:GDP300 4.3 49.2 1.0 O3B E:GDP300 4.3 49.2 1.0 NZ E:LYS14 4.5 52.2 1.0 OE1 E:GLU132 4.5 51.1 1.0 CG E:GLU132 4.6 51.1 1.0 ND2 E:ASN272 4.7 53.1 1.0 CG E:ASP153 4.7 50.3 1.0 O1A E:GDP300 4.7 49.2 1.0 CA E:GLY155 4.8 48.2 1.0 OD1 E:ASP153 4.8 50.3 1.0 NZ E:LYS61 5.0 52.3 1.0

A.Koh, S.Ali, D.Popp, K.Tanaka, Y.Kitaoku, N.Miyazaki, K.Iwasaki, K.Mitsuoka, R.Robert, A.Narita. A New Actin-Like Filament From Clostridium Botulinum Exhibits A New System of Filament Turn Over To Be Published.