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Magnesium in PDB 7xqp: Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens

Enzymatic activity of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens

All present enzymatic activity of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens:
1.97.1.12;

Other elements in 7xqp:

The structure of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 271 in 7xqp

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Magnesium binding site 1 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:42.1
occ:1.00
MG A:CLA801 0.0 42.1 1.0
ND A:CLA801 2.0 42.1 1.0
NB A:CLA801 2.0 42.1 1.0
NA A:CLA801 2.1 42.1 1.0
NC A:CLA801 2.1 42.1 1.0
NE2 A:HIS675 2.2 38.9 1.0
C4D A:CLA801 2.9 42.1 1.0
C1B A:CLA801 3.0 42.1 1.0
CE1 A:HIS675 3.0 38.9 1.0
C4A A:CLA801 3.0 42.1 1.0
C4B A:CLA801 3.1 42.1 1.0
C1C A:CLA801 3.1 42.1 1.0
C4C A:CLA801 3.1 42.1 1.0
C1D A:CLA801 3.1 42.1 1.0
C1A A:CLA801 3.1 42.1 1.0
CD2 A:HIS675 3.3 38.9 1.0
CHB A:CLA801 3.4 42.1 1.0
CHC A:CLA801 3.4 42.1 1.0
CHA A:CLA801 3.5 42.1 1.0
CHD A:CLA801 3.5 42.1 1.0
CAB B:CLA801 3.8 50.0 1.0
C3B B:CLA801 4.0 50.2 1.0
ND1 A:HIS675 4.2 38.9 1.0
C3D A:CLA801 4.2 42.1 1.0
C2B A:CLA801 4.3 42.1 1.0
C3B A:CLA801 4.3 42.1 1.0
C4B B:CLA801 4.3 49.9 1.0
C2C A:CLA801 4.3 42.1 1.0
C2D A:CLA801 4.3 42.1 1.0
CHC B:CLA801 4.4 46.4 1.0
C3C A:CLA801 4.4 42.1 1.0
C3A A:CLA801 4.4 42.1 1.0
CG A:HIS675 4.4 38.9 1.0
C2A A:CLA801 4.4 42.1 1.0
CBB B:CLA801 4.7 50.4 1.0
C2B B:CLA801 4.8 51.8 1.0
CBD A:CLA801 4.9 42.1 1.0
C1C B:CLA801 5.0 47.3 1.0
CMA A:CLA801 5.0 42.1 1.0
CED A:CLA852 5.0 52.3 1.0

Magnesium binding site 2 out of 271 in 7xqp

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Magnesium binding site 2 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:52.3
occ:1.00
MG A:CLA802 0.0 52.3 1.0
NB A:CLA802 2.0 52.3 1.0
ND A:CLA802 2.0 52.3 1.0
NA A:CLA802 2.1 52.3 1.0
NC A:CLA802 2.1 52.3 1.0
SD A:MET683 2.3 37.8 1.0
C4D A:CLA802 2.9 52.3 1.0
C1B A:CLA802 3.0 52.3 1.0
C4A A:CLA802 3.0 52.3 1.0
C4B A:CLA802 3.1 52.3 1.0
C1C A:CLA802 3.1 52.3 1.0
C4C A:CLA802 3.1 52.3 1.0
C1A A:CLA802 3.1 52.3 1.0
C1D A:CLA802 3.1 52.3 1.0
CHB A:CLA802 3.4 52.3 1.0
CHC A:CLA802 3.4 52.3 1.0
CHA A:CLA802 3.5 52.3 1.0
CHD A:CLA802 3.5 52.3 1.0
CE A:MET683 3.6 37.8 1.0
CG A:MET683 3.7 37.8 1.0
NE1 B:TRP582 3.9 32.3 1.0
CB A:MET683 4.0 37.8 1.0
CZ2 B:TRP582 4.2 32.3 1.0
C3D A:CLA802 4.3 52.3 1.0
C2B A:CLA802 4.3 52.3 1.0
C3B A:CLA802 4.3 52.3 1.0
C2C A:CLA802 4.3 52.3 1.0
C2D A:CLA802 4.4 52.3 1.0
C3C A:CLA802 4.4 52.3 1.0
C3A A:CLA802 4.4 52.3 1.0
CE2 B:TRP582 4.4 32.3 1.0
C2A A:CLA802 4.4 52.3 1.0
CBD A:CLA802 4.9 52.3 1.0

Magnesium binding site 3 out of 271 in 7xqp

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Magnesium binding site 3 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:52.3
occ:1.00
MG A:CLA803 0.0 52.3 1.0
NB A:CLA803 2.0 52.3 1.0
ND A:CLA803 2.0 52.3 1.0
NC A:CLA803 2.1 52.3 1.0
NA A:CLA803 2.1 52.3 1.0
CBB B:CLA802 2.1 52.3 1.0
C4D A:CLA803 2.9 52.3 1.0
C1B A:CLA803 3.0 52.3 1.0
C4B A:CLA803 3.0 52.3 1.0
C4A A:CLA803 3.0 52.3 1.0
C1C A:CLA803 3.1 52.3 1.0
C4C A:CLA803 3.1 52.3 1.0
C1D A:CLA803 3.2 52.3 1.0
C1A A:CLA803 3.2 52.3 1.0
CHB A:CLA803 3.4 52.3 1.0
CHC A:CLA803 3.4 52.3 1.0
CAB B:CLA802 3.5 52.3 1.0
CHA A:CLA803 3.5 52.3 1.0
CHD A:CLA803 3.5 52.3 1.0
C2B A:CLA803 4.2 52.3 1.0
C3B A:CLA803 4.2 52.3 1.0
C3D A:CLA803 4.2 52.3 1.0
C2C A:CLA803 4.3 52.3 1.0
C2D A:CLA803 4.4 52.3 1.0
C3C A:CLA803 4.4 52.3 1.0
C3B B:CLA802 4.4 52.3 1.0
C3A A:CLA803 4.4 52.3 1.0
C2A A:CLA803 4.5 52.3 1.0
CB B:ALA658 4.5 36.1 1.0
OD1 A:ASN599 4.7 32.8 1.0
CBD A:CLA803 4.9 52.3 1.0
C2 A:CLA801 5.0 42.1 1.0

Magnesium binding site 4 out of 271 in 7xqp

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Magnesium binding site 4 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:42.6
occ:1.00
MG A:CLA804 0.0 42.6 1.0
NE2 A:HIS50 1.9 36.3 1.0
NB A:CLA804 2.0 42.6 1.0
ND A:CLA804 2.0 42.6 1.0
NC A:CLA804 2.1 42.6 1.0
NA A:CLA804 2.1 42.6 1.0
CE1 A:HIS50 2.6 36.3 1.0
C4D A:CLA804 2.9 42.6 1.0
C1B A:CLA804 3.0 42.6 1.0
C4A A:CLA804 3.0 42.6 1.0
C4B A:CLA804 3.1 42.6 1.0
C1C A:CLA804 3.1 42.6 1.0
CD2 A:HIS50 3.1 36.3 1.0
C4C A:CLA804 3.1 42.6 1.0
C1A A:CLA804 3.2 42.6 1.0
C1D A:CLA804 3.2 42.6 1.0
CHB A:CLA804 3.4 42.6 1.0
CHC A:CLA804 3.4 42.6 1.0
CHA A:CLA804 3.5 42.6 1.0
CHD A:CLA804 3.5 42.6 1.0
CG J:PRO12 3.8 38.1 1.0
ND1 A:HIS50 3.8 36.3 1.0
CB J:PRO12 3.9 38.1 1.0
CG A:HIS50 4.1 36.3 1.0
C3D A:CLA804 4.3 42.6 1.0
C2B A:CLA804 4.3 42.6 1.0
C3B A:CLA804 4.3 42.6 1.0
C2C A:CLA804 4.3 42.6 1.0
C2D A:CLA804 4.4 42.6 1.0
C3C A:CLA804 4.4 42.6 1.0
C3A A:CLA804 4.4 42.6 1.0
C2A A:CLA804 4.5 42.6 1.0
CD J:PRO12 4.6 38.1 1.0
CBD A:CLA804 4.9 42.6 1.0

Magnesium binding site 5 out of 271 in 7xqp

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Magnesium binding site 5 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:52.3
occ:1.00
MG A:CLA805 0.0 52.3 1.0
NE2 A:HIS54 1.9 43.8 1.0
NB A:CLA805 2.0 52.3 1.0
ND A:CLA805 2.0 52.3 1.0
NA A:CLA805 2.1 52.3 1.0
NC A:CLA805 2.1 52.3 1.0
CE1 A:HIS54 2.5 43.8 1.0
C4D A:CLA805 2.9 52.3 1.0
C1B A:CLA805 3.0 52.3 1.0
C4A A:CLA805 3.0 52.3 1.0
C4B A:CLA805 3.1 52.3 1.0
C1C A:CLA805 3.1 52.3 1.0
C4C A:CLA805 3.1 52.3 1.0
C1D A:CLA805 3.1 52.3 1.0
C1A A:CLA805 3.2 52.3 1.0
CD2 A:HIS54 3.2 43.8 1.0
CHB A:CLA805 3.4 52.3 1.0
CHC A:CLA805 3.4 52.3 1.0
CHA A:CLA805 3.5 52.3 1.0
CHD A:CLA805 3.5 52.3 1.0
ND1 A:HIS54 3.7 43.8 1.0
CG A:HIS54 4.1 43.8 1.0
C3D A:CLA805 4.3 52.3 1.0
C7 A:CLA812 4.3 43.0 1.0
C2B A:CLA805 4.3 52.3 1.0
C3B A:CLA805 4.3 52.3 1.0
C2C A:CLA805 4.3 52.3 1.0
C2D A:CLA805 4.4 52.3 1.0
C3C A:CLA805 4.4 52.3 1.0
C3A A:CLA805 4.4 52.3 1.0
C2A A:CLA805 4.5 52.3 1.0
C5 A:CLA812 4.6 43.0 1.0
C6 A:CLA812 4.8 43.0 1.0
CBD A:CLA805 4.9 52.3 1.0

Magnesium binding site 6 out of 271 in 7xqp

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Magnesium binding site 6 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:52.3
occ:1.00
MG A:CLA806 0.0 52.3 1.0
NE2 A:HIS74 1.9 40.2 1.0
NB A:CLA806 2.0 52.3 1.0
ND A:CLA806 2.0 52.3 1.0
NA A:CLA806 2.1 52.3 1.0
NC A:CLA806 2.1 52.3 1.0
CD2 A:HIS74 2.9 40.2 1.0
CE1 A:HIS74 2.9 40.2 1.0
C4D A:CLA806 2.9 52.3 1.0
CMB A:CLA830 3.0 28.0 1.0
C1B A:CLA806 3.0 52.3 1.0
C4A A:CLA806 3.0 52.3 1.0
C4B A:CLA806 3.1 52.3 1.0
C1C A:CLA806 3.1 52.3 1.0
C1A A:CLA806 3.1 52.3 1.0
C4C A:CLA806 3.1 52.3 1.0
C1D A:CLA806 3.2 52.3 1.0
CHB A:CLA806 3.4 52.3 1.0
CHC A:CLA806 3.4 52.3 1.0
CHA A:CLA806 3.5 52.3 1.0
CHD A:CLA806 3.5 52.3 1.0
ND1 A:HIS74 4.0 40.2 1.0
CG A:HIS74 4.0 40.2 1.0
C3D A:CLA806 4.3 52.3 1.0
C2B A:CLA806 4.3 52.3 1.0
C3B A:CLA806 4.3 52.3 1.0
C2C A:CLA806 4.3 52.3 1.0
C2D A:CLA806 4.4 52.3 1.0
C3C A:CLA806 4.4 52.3 1.0
C3A A:CLA806 4.4 52.3 1.0
C2A A:CLA806 4.4 52.3 1.0
C2B A:CLA830 4.5 31.5 1.0
CBB A:CLA830 4.5 26.9 1.0
CG1 A:VAL70 4.7 39.3 1.0
CBD A:CLA806 4.9 52.3 1.0

Magnesium binding site 7 out of 271 in 7xqp

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Magnesium binding site 7 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:52.3
occ:1.00
MG A:CLA807 0.0 52.3 1.0
NB A:CLA807 2.0 52.3 1.0
ND A:CLA807 2.0 52.3 1.0
NC A:CLA807 2.1 52.3 1.0
NA A:CLA807 2.1 52.3 1.0
OE1 A:GLN77 2.4 38.7 1.0
C4D A:CLA807 2.9 52.3 1.0
C1B A:CLA807 3.0 52.3 1.0
C4A A:CLA807 3.0 52.3 1.0
C4B A:CLA807 3.1 52.3 1.0
C1C A:CLA807 3.1 52.3 1.0
C4C A:CLA807 3.1 52.3 1.0
C1D A:CLA807 3.1 52.3 1.0
C1A A:CLA807 3.2 52.3 1.0
CHB A:CLA807 3.4 52.3 1.0
CHC A:CLA807 3.4 52.3 1.0
CD A:GLN77 3.4 38.7 1.0
CHA A:CLA807 3.5 52.3 1.0
CHD A:CLA807 3.5 52.3 1.0
C17 A:CLA807 3.8 52.3 1.0
NE2 A:GLN77 3.9 38.7 1.0
C16 A:CLA807 4.0 52.3 1.0
C3D A:CLA807 4.3 52.3 1.0
C2B A:CLA807 4.3 52.3 1.0
C3B A:CLA807 4.3 52.3 1.0
C2C A:CLA807 4.3 52.3 1.0
C2D A:CLA807 4.4 52.3 1.0
C3C A:CLA807 4.4 52.3 1.0
C3A A:CLA807 4.4 52.3 1.0
C15 A:CLA807 4.4 52.3 1.0
C2A A:CLA807 4.5 52.3 1.0
C20 A:CLA807 4.7 52.3 1.0
CG A:GLN77 4.7 38.7 1.0
C18 A:CLA807 4.8 52.3 1.0
CMA A:CLA806 4.9 52.3 1.0
CBD A:CLA807 4.9 52.3 1.0

Magnesium binding site 8 out of 271 in 7xqp

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Magnesium binding site 8 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:38.2
occ:1.00
MG A:CLA808 0.0 38.2 1.0
NE2 A:HIS91 1.9 34.3 1.0
NB A:CLA808 2.0 38.2 1.0
ND A:CLA808 2.0 38.2 1.0
NC A:CLA808 2.1 38.2 1.0
NA A:CLA808 2.1 38.2 1.0
CE1 A:HIS91 2.6 34.3 1.0
C4D A:CLA808 2.9 38.2 1.0
C1B A:CLA808 3.0 38.2 1.0
C4A A:CLA808 3.0 38.2 1.0
C4B A:CLA808 3.1 38.2 1.0
C1C A:CLA808 3.1 38.2 1.0
CD2 A:HIS91 3.1 34.3 1.0
C4C A:CLA808 3.1 38.2 1.0
C1D A:CLA808 3.2 38.2 1.0
C1A A:CLA808 3.2 38.2 1.0
CHB A:CLA808 3.4 38.2 1.0
CHC A:CLA808 3.4 38.2 1.0
CHA A:CLA808 3.5 38.2 1.0
CHD A:CLA808 3.5 38.2 1.0
C9 A:LMU853 3.9 45.5 1.0
ND1 A:HIS91 3.9 34.3 1.0
CG A:HIS91 4.1 34.3 1.0
C3D A:CLA808 4.3 38.2 1.0
C8 A:LMU853 4.3 45.5 1.0
C2B A:CLA808 4.3 38.2 1.0
C3B A:CLA808 4.3 38.2 1.0
C2C A:CLA808 4.3 38.2 1.0
C7 A:LMU853 4.3 45.5 1.0
C2D A:CLA808 4.4 38.2 1.0
C3C A:CLA808 4.4 38.2 1.0
C3A A:CLA808 4.4 38.2 1.0
C2A A:CLA808 4.5 38.2 1.0
C10 A:LMU853 4.5 45.5 1.0
C11 A:LMU853 4.9 45.5 1.0
CBD A:CLA808 4.9 38.2 1.0
CBA A:CLA808 4.9 38.2 1.0

Magnesium binding site 9 out of 271 in 7xqp

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Magnesium binding site 9 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:52.3
occ:1.00
MG A:CLA809 0.0 52.3 1.0
NB A:CLA809 2.0 52.3 1.0
ND A:CLA809 2.0 52.3 1.0
NA A:CLA809 2.1 52.3 1.0
NC A:CLA809 2.1 52.3 1.0
OE1 A:GLN113 2.3 37.8 1.0
C4D A:CLA809 2.9 52.3 1.0
C1B A:CLA809 3.0 52.3 1.0
C4A A:CLA809 3.0 52.3 1.0
C4B A:CLA809 3.1 52.3 1.0
C1C A:CLA809 3.1 52.3 1.0
C4C A:CLA809 3.1 52.3 1.0
C1A A:CLA809 3.1 52.3 1.0
C1D A:CLA809 3.2 52.3 1.0
CD A:GLN113 3.3 37.8 1.0
CHB A:CLA809 3.4 52.3 1.0
CHC A:CLA809 3.4 52.3 1.0
CHA A:CLA809 3.5 52.3 1.0
CHD A:CLA809 3.5 52.3 1.0
NE2 A:GLN113 3.6 37.8 1.0
C3D A:CLA809 4.3 52.3 1.0
C2B A:CLA809 4.3 52.3 1.0
C3B A:CLA809 4.3 52.3 1.0
C2C A:CLA809 4.3 52.3 1.0
C2D A:CLA809 4.4 52.3 1.0
C3C A:CLA809 4.4 52.3 1.0
C3A A:CLA809 4.4 52.3 1.0
C2 A:CLA828 4.4 52.3 1.0
C3 A:CLA828 4.4 52.3 1.0
C2A A:CLA809 4.4 52.3 1.0
C1 A:CLA828 4.6 52.3 1.0
CG A:GLN113 4.6 37.8 1.0
C4 A:CLA828 4.6 52.3 1.0
O1A A:CLA828 4.8 52.3 1.0
CBA A:CLA809 4.8 52.3 1.0
CBD A:CLA809 4.9 52.3 1.0
C5 A:CLA828 5.0 52.3 1.0

Magnesium binding site 10 out of 271 in 7xqp

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Magnesium binding site 10 out of 271 in the Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Psi-Lhci-Lhcii-LHCB9 Supercomplex of Physcomitrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:46.6
occ:1.00
MG A:CLA810 0.0 46.6 1.0
NE2 A:GLN121 1.9 32.9 1.0
NB A:CLA810 2.0 46.6 1.0
ND A:CLA810 2.0 46.6 1.0
NC A:CLA810 2.1 46.6 1.0
NA A:CLA810 2.1 46.6 1.0
C4D A:CLA810 2.9 46.6 1.0
C1B A:CLA810 3.0 46.6 1.0
C4A A:CLA810 3.0 46.6 1.0
C4B A:CLA810 3.1 46.6 1.0
C1C A:CLA810 3.1 46.6 1.0
C4C A:CLA810 3.1 46.6 1.0
C1D A:CLA810 3.1 46.6 1.0
C1A A:CLA810 3.2 46.6 1.0
CD A:GLN121 3.2 32.9 1.0
CHB A:CLA810 3.4 46.6 1.0
CHC A:CLA810 3.4 46.6 1.0
CHA A:CLA810 3.5 46.6 1.0
C14 A:CLA828 3.5 52.3 1.0
CHD A:CLA810 3.5 46.6 1.0
OE1 A:GLN121 4.0 32.9 1.0
CG A:GLN121 4.1 32.9 1.0
C3D A:CLA810 4.3 46.6 1.0
C2B A:CLA810 4.3 46.6 1.0
C3B A:CLA810 4.3 46.6 1.0
C2C A:CLA810 4.3 46.6 1.0
C2D A:CLA810 4.3 46.6 1.0
C3C A:CLA810 4.4 46.6 1.0
C3A A:CLA810 4.4 46.6 1.0
C2A A:CLA810 4.5 46.6 1.0
C15 A:CLA828 4.6 52.3 1.0
C13 A:CLA828 4.6 52.3 1.0
CBD A:CLA810 4.9 46.6 1.0

Reference:

S.Zhang, K.L.Tang, Q.J.Yan, X.Y.Li, L.L.Shen, W.D.Wang, Y.K.He, T.Y.Kuang, G.Y.Han, J.R.Shen, X.Zhang. Structural Insights Into A Unique Psi-Lhci-Lhcii-LHCB9 Supercomplex Involved in State Transitions in Physcomitrella Patens To Be Published.
Page generated: Thu Oct 3 12:31:41 2024

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