Magnesium in PDB 7yk1: Structural Basis of Human PRPS2 Filaments

All present enzymatic activity of Structural Basis of Human PRPS2 Filaments:
2.7.6.1;

The binding sites of Magnesium atom in the Structural Basis of Human PRPS2 Filaments (pdb code 7yk1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structural Basis of Human PRPS2 Filaments, PDB code: 7yk1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Structural Basis of Human PRPS2 Filaments


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Basis of Human PRPS2 Filaments within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:6.8 occ:1.00 O1A C:ADP401 2.1 22.2 1.0 NE2 A:HIS130 2.2 14.7 1.0 O1B C:ADP401 2.4 23.3 1.0 CD2 A:HIS130 3.0 7.3 1.0 CE1 A:HIS130 3.3 11.8 1.0 PA C:ADP401 3.4 27.9 1.0 NZ A:LYS99 3.5 17.5 1.0 PB C:ADP401 3.6 45.4 1.0 O3A C:ADP401 3.8 11.9 1.0 OD2 A:ASP98 3.8 17.6 1.0 OD1 A:ASP98 4.0 19.6 1.0 CG A:HIS130 4.2 1.4 1.0 O3B C:ADP401 4.3 26.0 1.0 ND1 A:HIS130 4.3 9.1 1.0 CG A:ASP98 4.3 11.3 1.0 O5' C:ADP401 4.4 18.1 1.0 O2A C:ADP401 4.5 14.0 1.0 O A:ARG96 4.6 14.0 1.0 C5' C:ADP401 4.8 11.2 1.0 O2B C:ADP401 4.9 24.6 1.0 CE A:LYS99 4.9 15.2 1.0

Magnesium binding site 2 out of 6 in the Structural Basis of Human PRPS2 Filaments


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural Basis of Human PRPS2 Filaments within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:7.1 occ:1.00 O2A E:ADP402 2.1 23.5 1.0 NE2 B:HIS130 2.2 14.5 1.0 O3B E:ADP402 2.4 21.6 1.0 CD2 B:HIS130 3.0 8.6 1.0 CE1 B:HIS130 3.3 10.1 1.0 PA E:ADP402 3.4 30.4 1.0 NZ B:LYS99 3.6 19.2 1.0 PB E:ADP402 3.6 44.2 1.0 O3A E:ADP402 3.8 11.8 1.0 OD2 B:ASP98 3.8 17.6 1.0 OD1 B:ASP98 4.0 19.0 1.0 CG B:HIS130 4.2 2.1 1.0 O2B E:ADP402 4.3 24.9 1.0 ND1 B:HIS130 4.3 9.0 1.0 CG B:ASP98 4.3 12.0 1.0 O5' E:ADP402 4.4 17.7 1.0 O1A E:ADP402 4.5 17.8 1.0 O B:ARG96 4.6 16.2 1.0 C5' E:ADP402 4.8 11.3 1.0 O1B E:ADP402 4.9 25.8 1.0 CE B:LYS99 4.9 14.2 1.0

Magnesium binding site 3 out of 6 in the Structural Basis of Human PRPS2 Filaments


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structural Basis of Human PRPS2 Filaments within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg404 b:7.2 occ:1.00 O2A A:ADP403 2.0 21.9 1.0 NE2 C:HIS130 2.2 14.7 1.0 O3B A:ADP403 2.3 23.0 1.0 CD2 C:HIS130 3.0 7.8 1.0 CE1 C:HIS130 3.2 9.3 1.0 PA A:ADP403 3.4 26.7 1.0 PB A:ADP403 3.5 43.9 1.0 NZ C:LYS99 3.7 18.6 1.0 O3A A:ADP403 3.8 14.5 1.0 O2B A:ADP403 4.1 22.5 1.0 OD2 C:ASP98 4.2 15.9 1.0 CG C:HIS130 4.2 2.8 1.0 ND1 C:HIS130 4.3 12.7 1.0 OD1 C:ASP98 4.3 19.9 1.0 O5' A:ADP403 4.3 20.6 1.0 O1A A:ADP403 4.5 13.7 1.0 C5' A:ADP403 4.7 12.2 1.0 O C:ARG96 4.7 14.7 1.0 CG C:ASP98 4.7 12.7 1.0 O1B A:ADP403 4.8 24.3 1.0

Magnesium binding site 4 out of 6 in the Structural Basis of Human PRPS2 Filaments


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structural Basis of Human PRPS2 Filaments within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg403 b:5.1 occ:1.00 O3B F:ADP401 2.2 25.6 1.0 O2A F:ADP401 2.2 22.7 1.0 NE2 D:HIS130 2.3 16.3 1.0 CD2 D:HIS130 3.1 9.3 1.0 CE1 D:HIS130 3.4 12.0 1.0 PA F:ADP401 3.5 32.5 1.0 PB F:ADP401 3.5 42.8 1.0 NZ D:LYS99 3.5 17.8 1.0 O3A F:ADP401 3.7 13.5 1.0 OD2 D:ASP98 3.9 17.2 1.0 OD1 D:ASP98 4.1 20.0 1.0 O2B F:ADP401 4.2 25.4 1.0 CG D:HIS130 4.3 2.9 1.0 ND1 D:HIS130 4.4 11.4 1.0 CG D:ASP98 4.4 12.7 1.0 O5' F:ADP401 4.5 17.3 1.0 O1A F:ADP401 4.5 16.2 1.0 O1B F:ADP401 4.7 22.7 1.0 O D:ARG96 4.7 15.3 1.0 CE D:LYS99 4.9 14.2 1.0 C5' F:ADP401 5.0 10.7 1.0

Magnesium binding site 5 out of 6 in the Structural Basis of Human PRPS2 Filaments


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structural Basis of Human PRPS2 Filaments within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg404 b:8.9 occ:1.00 O1A B:ADP404 2.0 20.8 1.0 NE2 E:HIS130 2.2 15.5 1.0 O1B B:ADP404 2.4 22.6 1.0 CD2 E:HIS130 3.0 8.4 1.0 CE1 E:HIS130 3.2 9.5 1.0 PA B:ADP404 3.4 26.5 1.0 PB B:ADP404 3.6 43.8 1.0 NZ E:LYS99 3.7 17.9 1.0 O3A B:ADP404 3.8 15.4 1.0 O3B B:ADP404 4.1 23.1 1.0 OD2 E:ASP98 4.1 14.8 1.0 CG E:HIS130 4.2 3.8 1.0 ND1 E:HIS130 4.3 14.0 1.0 OD1 E:ASP98 4.3 19.1 1.0 O5' B:ADP404 4.3 20.0 1.0 O2A B:ADP404 4.4 14.2 1.0 C5' B:ADP404 4.7 12.1 1.0 CG E:ASP98 4.7 10.7 1.0 O E:ARG96 4.7 15.2 1.0 O2B B:ADP404 4.8 23.4 1.0 CE E:LYS99 5.0 17.4 1.0

Magnesium binding site 6 out of 6 in the Structural Basis of Human PRPS2 Filaments


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structural Basis of Human PRPS2 Filaments within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg404 b:8.9 occ:1.00 O1A D:ADP404 2.2 22.4 1.0 O1B D:ADP404 2.2 24.3 1.0 NE2 F:HIS130 2.3 17.2 1.0 CD2 F:HIS130 3.1 9.8 1.0 CE1 F:HIS130 3.4 13.5 1.0 PA D:ADP404 3.5 34.4 1.0 PB D:ADP404 3.5 42.5 1.0 NZ F:LYS99 3.6 19.7 1.0 O3A D:ADP404 3.7 15.9 1.0 OD2 F:ASP98 3.9 19.2 1.0 OD1 F:ASP98 4.1 21.4 1.0 O3B D:ADP404 4.2 26.2 1.0 CG F:HIS130 4.3 3.8 1.0 ND1 F:HIS130 4.4 12.0 1.0 O5' D:ADP404 4.5 20.0 1.0 CG F:ASP98 4.5 14.6 1.0 O2A D:ADP404 4.5 17.6 1.0 O F:ARG96 4.7 16.3 1.0 O2B D:ADP404 4.7 24.4 1.0 CE F:LYS99 4.9 15.5 1.0 C5' D:ADP404 4.9 11.5 1.0

G.M.Lu, H.H.Hu, J.L.Liu. Structural Basis of Human PRPS2 Filaments To Be Published.