Magnesium in PDB 7ywa: Structure of Dini in Complex with Reca Filament

The binding sites of Magnesium atom in the Structure of Dini in Complex with Reca Filament (pdb code 7ywa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Dini in Complex with Reca Filament, PDB code: 7ywa:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Dini in Complex with Reca Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Dini in Complex with Reca Filament within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg401 b:62.3 occ:1.00 O2G F:AGS402 1.7 60.0 1.0 OG1 F:THR73 2.3 48.2 1.0 O2B F:AGS402 3.0 65.7 1.0 PG F:AGS402 3.2 56.8 1.0 CB F:THR73 3.4 48.6 1.0 O3G F:AGS402 3.6 63.5 1.0 OD2 F:ASP144 3.8 64.6 1.0 O3B F:AGS402 3.9 67.5 1.0 CG2 F:THR73 4.0 44.8 1.0 PB F:AGS402 4.1 83.4 1.0 OD1 F:ASP144 4.1 67.7 1.0 CG F:ASP144 4.4 58.9 1.0 OE2 F:GLU96 4.5 70.7 1.0 OE1 F:GLU96 4.6 67.2 1.0 CD F:GLU96 4.6 72.2 1.0 O1A F:AGS402 4.6 66.6 1.0 CA F:THR73 4.7 37.3 1.0 S1G F:AGS402 4.7 53.8 1.0 N F:THR73 4.8 41.7 1.0 O2A F:AGS402 4.9 59.8 1.0 O3A F:AGS402 5.0 56.9 1.0

Magnesium binding site 2 out of 2 in the Structure of Dini in Complex with Reca Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Dini in Complex with Reca Filament within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg403 b:40.9 occ:1.00 O2G G:AGS401 1.9 45.3 1.0 OG1 G:THR73 2.0 54.6 1.0 O1B G:AGS401 2.7 73.3 1.0 NZ F:LYS250 3.0 58.9 1.0 CB G:THR73 3.1 49.2 1.0 PG G:AGS401 3.4 52.7 1.0 CE F:LYS250 3.4 57.4 1.0 O3G G:AGS401 3.9 69.1 1.0 PB G:AGS401 3.9 75.4 1.0 CG2 G:THR73 3.9 44.3 1.0 OD1 G:ASP144 4.1 63.5 1.0 O3B G:AGS401 4.1 58.9 1.0 O2A G:AGS401 4.2 53.3 1.0 CA G:THR73 4.3 38.1 1.0 N G:THR73 4.3 33.7 1.0 OD2 G:ASP144 4.6 54.5 1.0 O3A G:AGS401 4.6 61.0 1.0 CG G:ASP144 4.7 52.6 1.0 S1G G:AGS401 4.8 58.9 1.0 PA G:AGS401 4.9 63.8 1.0 CD F:LYS250 4.9 56.0 1.0 CD G:GLU96 4.9 73.3 1.0 OE2 G:GLU96 4.9 67.9 1.0 OE1 G:GLU96 5.0 70.7 1.0

B.Gao, L.Liang, L.Su, A.Wen, C.Zhou, Y.Feng. Structural Basis For Regulation of Sos Response in Bacteria Proc.Natl.Acad.Sci.Usa 2022.
ISSN: ESSN 1091-6490