Magnesium in PDB 7yyv: Molecular Snapshots of Drug Release From Tubulin: 1 Nanosecond After Photoactivation.

The structure of Molecular Snapshots of Drug Release From Tubulin: 1 Nanosecond After Photoactivation., PDB code: 7yyv was solved by M.Wranik, T.Weinert, J.Standfuss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	9.49 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.53, 92.58, 83.99, 90, 96.71, 90
R / Rfree (%)	31.1 / 35.2

The structure of Molecular Snapshots of Drug Release From Tubulin: 1 Nanosecond After Photoactivation. also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Molecular Snapshots of Drug Release From Tubulin: 1 Nanosecond After Photoactivation. (pdb code 7yyv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Molecular Snapshots of Drug Release From Tubulin: 1 Nanosecond After Photoactivation., PDB code: 7yyv:

Magnesium binding site 1 out of 1 in the Molecular Snapshots of Drug Release From Tubulin: 1 Nanosecond After Photoactivation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Molecular Snapshots of Drug Release From Tubulin: 1 Nanosecond After Photoactivation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:27.6 occ:1.00 O1G A:GTP501 2.0 16.6 1.0 O A:HOH623 2.1 25.5 1.0 O A:HOH659 2.1 20.9 1.0 O A:HOH626 2.2 22.1 1.0 O A:HOH695 2.2 20.3 1.0 O2B A:GTP501 2.4 15.8 1.0 PG A:GTP501 3.4 17.4 1.0 PB A:GTP501 3.5 16.0 1.0 OE2 A:GLU71 3.6 35.7 1.0 O3B A:GTP501 3.8 18.6 1.0 CG A:GLU71 3.8 30.2 1.0 O3A A:GTP501 3.9 15.8 1.0 O2G A:GTP501 4.0 19.0 1.0 CD A:GLU71 4.0 31.6 1.0 OD2 A:ASP98 4.0 26.6 1.0 OD1 A:ASP69 4.2 22.6 1.0 CB A:ASP98 4.3 19.1 1.0 CB A:GLN11 4.3 14.8 1.0 OD2 A:ASP69 4.4 23.2 1.0 O3G A:GTP501 4.5 18.0 1.0 O B:HOH651 4.5 35.6 1.0 OE1 A:GLN11 4.5 21.5 1.0 CG A:ASP98 4.7 30.8 1.0 N A:GLN11 4.7 17.3 1.0 ND2 B:ASN247 4.7 44.6 1.0 CG A:ASP69 4.8 24.8 1.0 O1B A:GTP501 4.8 19.6 1.0 O2A A:GTP501 4.9 23.0 1.0 PA A:GTP501 5.0 17.7 1.0

M.Wranik, T.Weinert, C.Slavov, T.Masini, A.Furrer, N.Gaillard, D.Gioia, M.Ferrarotti, D.James, H.Glover, M.Carrillo, D.Kekilli, R.Stipp, P.Skopintsev, S.Brunle, T.Muhlethaler, J.Beale, D.Gashi, K.Nass, D.Ozerov, P.Johnson, C.Cirelli, C.Bacellar, M.Braun, M.Wang, F.Dworkowski, C.Milne, A.Cavalli, J.Wachtveitl, M.Steinmetz, J.Standfuss. Watching the Release of A Photopharmacological Drug From Tubulin Using Time-Resolved Serial Crystallography Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-36481-5