Magnesium in PDB 7z2a: P. Berghei Kinesin-8B Motor Domain in No Nucleotide State Bound to Tubulin Dimer

The binding sites of Magnesium atom in the P. Berghei Kinesin-8B Motor Domain in No Nucleotide State Bound to Tubulin Dimer (pdb code 7z2a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the P. Berghei Kinesin-8B Motor Domain in No Nucleotide State Bound to Tubulin Dimer, PDB code: 7z2a:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the P. Berghei Kinesin-8B Motor Domain in No Nucleotide State Bound to Tubulin Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P. Berghei Kinesin-8B Motor Domain in No Nucleotide State Bound to Tubulin Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:12.8 occ:1.00 O1B A:GTP501 1.9 13.7 1.0 O1G A:GTP501 2.1 13.9 1.0 PB A:GTP501 3.1 13.8 1.0 PG A:GTP501 3.2 13.8 1.0 O3B A:GTP501 3.6 13.7 1.0 O2G A:GTP501 3.6 14.0 1.0 OE1 A:GLU71 3.7 40.0 1.0 O3A A:GTP501 3.7 13.6 1.0 CD A:GLU71 3.8 39.6 1.0 OE2 A:GLU71 3.8 40.6 1.0 NZ H:LYS254 3.8 34.4 1.0 OE1 A:GLN11 3.9 15.0 1.0 CB A:GLN11 4.1 14.1 1.0 OD1 A:ASP69 4.3 22.1 1.0 O2B A:GTP501 4.4 13.8 1.0 O1A A:GTP501 4.4 13.3 1.0 O3G A:GTP501 4.5 14.0 1.0 N A:GLN11 4.5 13.7 1.0 CG A:GLU71 4.6 37.9 1.0 PA A:GTP501 4.6 13.4 1.0 O H:ASN249 4.8 34.5 1.0 CD A:GLN11 4.9 14.8 1.0 CA A:GLN11 4.9 13.8 1.0

Magnesium binding site 2 out of 2 in the P. Berghei Kinesin-8B Motor Domain in No Nucleotide State Bound to Tubulin Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P. Berghei Kinesin-8B Motor Domain in No Nucleotide State Bound to Tubulin Dimer within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:26.5 occ:1.00 O2B H:G2P501 2.2 27.2 1.0 O2G H:G2P501 2.6 28.1 1.0 PG H:G2P501 3.5 28.2 1.0 PB H:G2P501 3.6 27.1 1.0 O1G H:G2P501 3.8 28.2 1.0 O3B H:G2P501 3.9 27.6 1.0 CB H:GLN11 3.9 26.4 1.0 OE1 H:GLN11 4.1 28.3 1.0 OE2 H:GLU71 4.2 86.2 1.0 O2A H:G2P501 4.3 26.1 1.0 OD1 H:ASP69 4.3 38.9 1.0 N H:GLN11 4.5 25.1 1.0 CD H:GLU71 4.6 82.8 1.0 C3A H:G2P501 4.6 26.8 1.0 OD2 H:ASP69 4.7 39.1 1.0 O1B H:G2P501 4.7 27.2 1.0 CA H:GLN11 4.8 25.7 1.0 CG2 H:THR74 4.8 72.9 1.0 CG H:GLU71 4.8 76.5 1.0 CD H:GLN11 4.8 27.9 1.0 O3G H:G2P501 4.9 28.3 1.0 CG H:ASP69 5.0 38.6 1.0 CG H:GLN11 5.0 27.1 1.0 CB H:GLU71 5.0 70.5 1.0

T.Liu, F.Shilliday, A.D.Cook, M.Zeeshan, D.Brady, R.Tewari, C.J.Sutherland, A.J.Roberts, C.A.Moores. Mechanochemical Tuning of A Kinesin Motor Essential For Malaria Parasite Transmission. Nat Commun V. 13 6988 2022.
ISSN: ESSN 2041-1723
PubMed: 36384964
DOI: 10.1038/S41467-022-34710-X