Magnesium in PDB 7z2b: P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer

The binding sites of Magnesium atom in the P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer (pdb code 7z2b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer, PDB code: 7z2b:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg402 b:20.0 occ:1.00 OG K:SER212 2.0 20.0 1.0 HG1 K:THR105 2.0 20.0 1.0 O3G K:ANP401 2.1 20.0 1.0 O2B K:ANP401 2.1 20.0 1.0 OG1 K:THR105 2.5 20.0 1.0 HB2 K:SER212 3.1 20.0 1.0 CB K:SER212 3.1 20.0 1.0 PB K:ANP401 3.4 20.0 1.0 PG K:ANP401 3.4 20.0 1.0 N3B K:ANP401 3.7 20.0 1.0 HB3 K:SER212 3.7 20.0 1.0 H K:THR105 3.9 20.0 1.0 CB K:THR105 3.9 20.0 1.0 HB3 K:ASP244 4.0 20.0 1.0 HB K:THR105 4.0 20.0 1.0 N K:SER212 4.0 20.0 1.0 O1G K:ANP401 4.2 20.0 1.0 CA K:SER212 4.2 20.0 1.0 O1A K:ANP401 4.3 20.0 1.0 O1B K:ANP401 4.4 20.0 1.0 O3A K:ANP401 4.4 20.0 1.0 N K:THR105 4.5 20.0 1.0 HA K:SER212 4.5 20.0 1.0 O2G K:ANP401 4.5 20.0 1.0 HB2 K:LYS104 4.6 20.0 1.0 CA K:THR105 4.7 20.0 1.0 PA K:ANP401 4.7 20.0 1.0 HG21 K:THR105 4.8 20.0 1.0 HA K:THR105 4.8 20.0 1.0 CB K:ASP244 4.9 20.0 1.0 HH22 K:ARG200 4.9 20.0 1.0 CG2 K:THR105 4.9 20.0 1.0 HB2 K:ASP244 4.9 20.0 1.0 O K:ASP244 5.0 20.0 1.0

Magnesium binding site 2 out of 3 in the P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:20.0 occ:1.00 O1B A:GTP501 1.9 20.0 1.0 O1G A:GTP501 2.1 20.0 1.0 PB A:GTP501 3.1 20.0 1.0 PG A:GTP501 3.2 20.0 1.0 HZ2 H:LYS254 3.2 20.0 1.0 HB2 A:GLN11 3.2 20.0 1.0 O3B A:GTP501 3.6 20.0 1.0 O2G A:GTP501 3.6 20.0 1.0 O3A A:GTP501 3.7 20.0 1.0 HZ3 H:LYS254 3.7 20.0 1.0 NZ H:LYS254 3.8 20.0 1.0 OE1 A:GLN11 3.9 20.0 1.0 H A:GLN11 3.9 20.0 1.0 HZ1 H:LYS254 4.1 20.0 1.0 CB A:GLN11 4.1 20.0 1.0 HB3 A:GLN11 4.1 20.0 1.0 HB2 A:ASP98 4.3 20.0 1.0 OD1 A:ASP69 4.3 20.0 1.0 O2B A:GTP501 4.4 20.0 1.0 O1A A:GTP501 4.4 20.0 1.0 O3G A:GTP501 4.5 20.0 1.0 N A:GLN11 4.5 20.0 1.0 HG1 A:THR145 4.5 20.0 1.0 PA A:GTP501 4.6 20.0 1.0 HB3 A:ASP98 4.8 20.0 1.0 HB2 H:ASN249 4.8 20.0 1.0 O H:ASN249 4.8 20.0 1.0 CD A:GLN11 4.9 20.0 1.0 CA A:GLN11 4.9 20.0 1.0 HA2 A:GLY10 5.0 20.0 1.0 CB A:ASP98 5.0 20.0 1.0

Magnesium binding site 3 out of 3 in the P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P. Berghei Kinesin-8B Motor Domain in Amppnp State Bound to Tubulin Dimer within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:20.0 occ:1.00 O2B H:G2P501 2.2 20.0 1.0 O2G H:G2P501 2.6 20.0 1.0 HB2 H:GLN11 3.1 20.0 1.0 PG H:G2P501 3.5 20.0 1.0 PB H:G2P501 3.6 20.0 1.0 O1G H:G2P501 3.8 20.0 1.0 HB3 H:GLN11 3.8 20.0 1.0 O3B H:G2P501 3.9 20.0 1.0 CB H:GLN11 3.9 20.0 1.0 H H:GLN11 4.0 20.0 1.0 OE1 H:GLN11 4.1 20.0 1.0 OE2 H:GLU71 4.2 20.0 1.0 HG21 H:THR74 4.2 20.0 1.0 HB2 H:GLU71 4.2 20.0 1.0 O2A H:G2P501 4.3 20.0 1.0 OD1 H:ASP69 4.3 20.0 1.0 HG3 H:GLU71 4.3 20.0 1.0 H3A2 H:G2P501 4.4 20.0 1.0 N H:GLN11 4.5 20.0 1.0 CD H:GLU71 4.6 20.0 1.0 HG1 H:THR145 4.6 20.0 1.0 HG23 H:THR74 4.6 20.0 1.0 C3A H:G2P501 4.6 20.0 1.0 HB H:THR145 4.6 20.0 1.0 OD2 H:ASP69 4.7 20.0 1.0 O1B H:G2P501 4.7 20.0 1.0 CA H:GLN11 4.8 20.0 1.0 CG2 H:THR74 4.8 20.0 1.0 CG H:GLU71 4.8 20.0 1.0 CD H:GLN11 4.8 20.0 1.0 O3G H:G2P501 4.9 20.0 1.0 CG H:ASP69 5.0 20.0 1.0 CG H:GLN11 5.0 20.0 1.0 HA2 H:GLY10 5.0 20.0 1.0 HA H:GLN11 5.0 20.0 1.0 CB H:GLU71 5.0 20.0 1.0

T.Liu, F.Shilliday, A.D.Cook, M.Zeeshan, D.Brady, R.Tewari, C.J.Sutherland, A.J.Roberts, C.A.Moores. Mechanochemical Tuning of A Kinesin Motor Essential For Malaria Parasite Transmission. Nat Commun V. 13 6988 2022.
ISSN: ESSN 2041-1723
PubMed: 36384964
DOI: 10.1038/S41467-022-34710-X