Magnesium in PDB 7z31: Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore).

Enzymatic activity of Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore).

All present enzymatic activity of Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore).:
2.7.7.6;

Other elements in 7z31:

The structure of Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore). also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore). (pdb code 7z31). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore)., PDB code: 7z31:

Magnesium binding site 1 out of 1 in 7z31

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Magnesium Binding Sites List in 7z31

Magnesium binding site 1 out of 1 in the Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore).

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Yeast Rna Polymerase III-TY1 Integrase Complex at 2.7 A (Focus Subunit C11, No C11 C-Terminal Zn-Ribbon in the Funnel Pore). within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg1503 b:52.6 occ:1.00	OD1	A:ASP511	2.0	30.4	1.0
	OD2	A:ASP511	2.0	39.0	1.0
	OD1	A:ASP513	2.0	27.5	1.0
	O	A:HOH4001	2.1	34.3	1.0
	CG	A:ASP511	2.1	31.9	1.0
	OD1	A:ASP515	2.1	34.3	1.0
	CG	A:ASP513	2.4	17.1	1.0
	OD2	A:ASP513	2.5	23.9	1.0
	CG	A:ASP515	3.1	30.9	1.0
	CB	A:ASP511	3.4	19.1	1.0
	OD2	A:ASP515	3.5	36.0	1.0
	CB	A:ASP513	3.6	10.0	1.0
	N	A:ASP513	3.8	20.8	1.0
	C	A:ASP511	3.8	26.1	1.0
	O	A:ASP511	3.8	35.9	1.0
	CA	A:ASP511	3.9	17.0	1.0
	N	A:ASP511	4.0	14.9	1.0
	CA	A:ASP513	4.2	15.0	1.0
	N	A:PHE512	4.3	15.3	1.0
	CB	A:ASP515	4.3	16.0	1.0
	C	A:ASP513	4.5	14.1	1.0
	N	A:ASP515	4.6	18.7	1.0
	O	A:ASP513	4.8	27.3	1.0
	C	A:PHE512	4.8	16.7	1.0
	CA	A:ASP515	4.9	8.0	1.0
	OD2	B:ASP769	5.0	24.6	1.0

Reference:

P.Q.Nguyen, S.Huecas, A.Asif-Laidin, A.Plaza-Pegueroles, B.Capuzzi, N.Palmic, C.Conesa, J.Acker, J.Reguera, P.Lesage, C.Fernandez-Tornero. Structural Basis of TY1 Integrase Tethering to Rna Polymerase III For Targeted Retrotransposon Integration. Nat Commun V. 14 1729 2023.
ISSN: ESSN 2041-1723
PubMed: 36977686
DOI: 10.1038/S41467-023-37109-4

Page generated: Thu Oct 3 16:15:04 2024

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