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Magnesium in PDB 7z5j: The Molybdenum Storage Protein Loaded with Tungstate

Other elements in 7z5j:

The structure of The Molybdenum Storage Protein Loaded with Tungstate also contains other interesting chemical elements:

Molybdenum (Mo) 6 atoms
Tungsten (W) 220 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the The Molybdenum Storage Protein Loaded with Tungstate (pdb code 7z5j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the The Molybdenum Storage Protein Loaded with Tungstate, PDB code: 7z5j:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 7z5j

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Magnesium binding site 1 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:98.1
occ:1.00
O2A B:ATP302 1.9 106.1 1.0
O1B B:ATP302 1.9 106.1 1.0
O1G B:ATP302 1.9 106.1 1.0
PG B:ATP302 3.1 106.1 1.0
PB B:ATP302 3.2 106.1 1.0
PA B:ATP302 3.2 106.1 1.0
O2 B:MOO301 3.3 113.6 1.0
O3B B:ATP302 3.5 106.1 1.0
O3G B:ATP302 3.6 106.1 1.0
O3A B:ATP302 3.7 106.1 1.0
O5' B:ATP302 3.9 106.1 1.0
NH2 B:ARG83 4.0 101.4 1.0
OD2 B:ASP170 4.2 101.6 1.0
OE1 B:GLU227 4.2 104.4 1.0
NZ B:LYS42 4.2 101.4 1.0
MO B:MOO301 4.2 113.6 1.0
O3 B:MOO301 4.2 113.6 1.0
NZ B:LYS189 4.4 102.0 1.0
O4 B:MOO301 4.4 113.6 1.0
O2G B:ATP302 4.4 106.1 1.0
O2B B:ATP302 4.5 106.1 1.0
O1A B:ATP302 4.5 106.1 1.0
OD1 B:ASP170 4.5 101.6 1.0
O A:THR19 4.5 103.9 1.0
CG B:ASP170 4.6 101.6 1.0
NH1 B:ARG168 4.7 101.4 1.0
OG1 B:THR169 4.8 101.4 1.0
OE1 A:GLN21 4.9 106.2 1.0

Magnesium binding site 2 out of 12 in 7z5j

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Magnesium binding site 2 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:97.7
occ:1.00
O1B A:ATP302 1.8 100.4 1.0
O A:PRO227 1.9 101.4 1.0
O2A A:ATP302 1.9 100.4 1.0
OE2 A:GLU190 1.9 101.4 1.0
PB A:ATP302 3.0 100.4 1.0
CD A:GLU190 3.0 101.4 1.0
C A:PRO227 3.1 101.4 1.0
PA A:ATP302 3.2 100.4 1.0
O3A A:ATP302 3.5 100.4 1.0
OE1 A:GLU190 3.6 101.4 1.0
OD2 A:ASP171 3.7 101.4 1.0
O2B A:ATP302 3.7 100.4 1.0
CA A:PRO227 3.8 101.4 1.0
NZ A:LYS45 4.1 101.4 1.0
N A:VAL228 4.1 101.4 1.0
C5' A:ATP302 4.1 100.4 1.0
O1G A:ATP302 4.1 100.4 1.0
O5' A:ATP302 4.1 100.4 1.0
O3G A:ATP302 4.2 100.4 1.0
CB A:PRO227 4.2 101.4 1.0
CG A:GLU190 4.2 101.4 1.0
O3B A:ATP302 4.2 100.4 1.0
O1A A:ATP302 4.3 100.4 1.0
CA A:VAL228 4.3 101.4 1.0
PG A:ATP302 4.5 100.4 1.0
OD1 A:ASP171 4.5 101.4 1.0
CG A:ASP171 4.5 101.4 1.0
CG1 A:VAL228 4.7 101.4 1.0

Magnesium binding site 3 out of 12 in 7z5j

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Magnesium binding site 3 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg303

b:97.5
occ:1.00
O2A D:ATP302 1.9 105.5 1.0
O1G D:ATP302 1.9 105.5 1.0
O1B D:ATP302 1.9 105.5 1.0
PG D:ATP302 3.1 105.5 1.0
PB D:ATP302 3.2 105.5 1.0
PA D:ATP302 3.3 105.5 1.0
O2 D:MOO301 3.5 112.6 1.0
O3B D:ATP302 3.5 105.5 1.0
O3G D:ATP302 3.6 105.5 1.0
O3A D:ATP302 3.7 105.5 1.0
O5' D:ATP302 4.0 105.5 1.0
NH2 D:ARG83 4.0 101.4 1.0
OD2 D:ASP170 4.2 101.4 1.0
NZ D:LYS42 4.2 101.4 1.0
MO D:MOO301 4.2 112.6 1.0
O1 D:MOO301 4.3 112.6 1.0
O4 D:MOO301 4.3 112.6 1.0
NZ D:LYS189 4.3 101.4 1.0
NH1 D:ARG168 4.3 101.4 1.0
O2G D:ATP302 4.4 105.5 1.0
O1A D:ATP302 4.5 105.5 1.0
O2B D:ATP302 4.5 105.5 1.0
OD1 D:ASP170 4.5 101.4 1.0
OE1 D:GLU227 4.5 104.0 1.0
O C:THR19 4.6 103.7 1.0
CG D:ASP170 4.6 101.4 1.0
OG1 D:THR169 4.9 101.4 1.0
OE1 C:GLN21 4.9 106.3 1.0

Magnesium binding site 4 out of 12 in 7z5j

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Magnesium binding site 4 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg303

b:95.7
occ:1.00
O1B C:ATP302 1.8 98.1 1.0
O C:PRO227 1.9 101.4 1.0
O2A C:ATP302 1.9 98.1 1.0
OE2 C:GLU190 1.9 101.4 1.0
PB C:ATP302 3.0 98.1 1.0
CD C:GLU190 3.1 101.4 1.0
C C:PRO227 3.1 101.4 1.0
PA C:ATP302 3.2 98.1 1.0
O3A C:ATP302 3.5 98.1 1.0
OE1 C:GLU190 3.6 101.4 1.0
OD2 C:ASP171 3.7 101.4 1.0
O2B C:ATP302 3.8 98.1 1.0
CA C:PRO227 3.9 101.4 1.0
NZ C:LYS45 4.0 101.4 1.0
O1G C:ATP302 4.1 98.1 1.0
N C:VAL228 4.1 101.4 1.0
C5' C:ATP302 4.1 98.1 1.0
O5' C:ATP302 4.1 98.1 1.0
CB C:PRO227 4.2 101.4 1.0
CG C:GLU190 4.2 101.4 1.0
O3G C:ATP302 4.3 98.1 1.0
O3B C:ATP302 4.3 98.1 1.0
CA C:VAL228 4.3 101.4 1.0
O1A C:ATP302 4.3 98.1 1.0
OD1 C:ASP171 4.5 101.4 1.0
PG C:ATP302 4.5 98.1 1.0
CG C:ASP171 4.5 101.4 1.0
CG1 C:VAL228 4.6 101.4 1.0

Magnesium binding site 5 out of 12 in 7z5j

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Magnesium binding site 5 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg303

b:97.3
occ:1.00
O1B F:ATP302 1.9 107.2 1.0
O2A F:ATP302 1.9 107.2 1.0
O1G F:ATP302 1.9 107.2 1.0
PB F:ATP302 3.1 107.2 1.0
PG F:ATP302 3.1 107.2 1.0
PA F:ATP302 3.2 107.2 1.0
O3 F:MOO301 3.3 113.0 1.0
O3B F:ATP302 3.5 107.2 1.0
O3G F:ATP302 3.6 107.2 1.0
O3A F:ATP302 3.7 107.2 1.0
O5' F:ATP302 3.9 107.2 1.0
NH2 F:ARG83 3.9 101.4 1.0
OD2 F:ASP170 4.1 101.8 1.0
NH1 F:ARG168 4.1 101.4 1.0
MO F:MOO301 4.2 113.0 1.0
NZ F:LYS42 4.2 101.4 1.0
O4 F:MOO301 4.3 113.0 1.0
NZ F:LYS189 4.3 103.5 1.0
O2 F:MOO301 4.4 113.0 1.0
O2G F:ATP302 4.4 107.2 1.0
O2B F:ATP302 4.5 107.2 1.0
O E:THR19 4.5 104.6 1.0
O1A F:ATP302 4.5 107.2 1.0
OE1 F:GLU227 4.6 104.5 1.0
CG F:ASP170 4.6 101.8 1.0
OD1 F:ASP170 4.7 101.8 1.0
OG1 F:THR169 4.8 101.4 1.0
OE1 E:GLN21 4.8 107.5 1.0

Magnesium binding site 6 out of 12 in 7z5j

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Magnesium binding site 6 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg303

b:96.0
occ:1.00
O1B E:ATP302 1.8 96.8 1.0
O E:PRO227 1.9 101.4 1.0
O2A E:ATP302 1.9 96.8 1.0
OE2 E:GLU190 1.9 101.4 1.0
CD E:GLU190 3.0 101.4 1.0
PB E:ATP302 3.0 96.8 1.0
C E:PRO227 3.1 101.4 1.0
PA E:ATP302 3.2 96.8 1.0
O3A E:ATP302 3.5 96.8 1.0
OE1 E:GLU190 3.6 101.4 1.0
OD2 E:ASP171 3.7 101.4 1.0
O2B E:ATP302 3.8 96.8 1.0
CA E:PRO227 3.9 101.4 1.0
O1G E:ATP302 4.1 96.8 1.0
N E:VAL228 4.1 101.4 1.0
NZ E:LYS45 4.1 101.4 1.0
C5' E:ATP302 4.1 96.8 1.0
O5' E:ATP302 4.1 96.8 1.0
CG E:GLU190 4.2 101.4 1.0
CB E:PRO227 4.2 101.4 1.0
O3G E:ATP302 4.2 96.8 1.0
O3B E:ATP302 4.3 96.8 1.0
CA E:VAL228 4.3 101.4 1.0
O1A E:ATP302 4.3 96.8 1.0
OD1 E:ASP171 4.5 101.4 1.0
PG E:ATP302 4.5 96.8 1.0
CG E:ASP171 4.5 101.4 1.0
CG1 E:VAL228 4.7 101.4 1.0

Magnesium binding site 7 out of 12 in 7z5j

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Magnesium binding site 7 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg303

b:97.0
occ:1.00
O1B H:ATP302 1.9 104.6 1.0
O2A H:ATP302 1.9 104.6 1.0
O1G H:ATP302 1.9 104.6 1.0
PG H:ATP302 3.1 104.6 1.0
PB H:ATP302 3.1 104.6 1.0
O2 H:MOO301 3.2 114.4 1.0
PA H:ATP302 3.2 104.6 1.0
O3B H:ATP302 3.5 104.6 1.0
O3G H:ATP302 3.6 104.6 1.0
O3A H:ATP302 3.7 104.6 1.0
O5' H:ATP302 3.9 104.6 1.0
NH2 H:ARG83 3.9 101.4 1.0
NH1 H:ARG168 4.1 101.4 1.0
MO H:MOO301 4.2 114.4 1.0
O3 H:MOO301 4.2 114.4 1.0
OD2 H:ASP170 4.2 101.4 1.0
NZ H:LYS42 4.3 101.4 1.0
O4 H:MOO301 4.4 114.4 1.0
O2G H:ATP302 4.4 104.6 1.0
NZ H:LYS189 4.4 101.4 1.0
O2B H:ATP302 4.4 104.6 1.0
O1A H:ATP302 4.5 104.6 1.0
O I:THR19 4.5 103.3 1.0
OD1 H:ASP170 4.5 101.4 1.0
OE1 H:GLU227 4.5 104.0 1.0
CG H:ASP170 4.7 101.4 1.0
OG1 H:THR169 4.8 101.4 1.0
OE1 I:GLN21 4.9 105.6 1.0

Magnesium binding site 8 out of 12 in 7z5j

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Magnesium binding site 8 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg303

b:95.6
occ:1.00
O1B I:ATP302 1.8 97.9 1.0
O I:PRO227 1.8 101.4 1.0
O2A I:ATP302 1.9 97.9 1.0
OE2 I:GLU190 1.9 101.4 1.0
PB I:ATP302 3.0 97.9 1.0
C I:PRO227 3.0 101.4 1.0
CD I:GLU190 3.1 101.4 1.0
PA I:ATP302 3.2 97.9 1.0
O3A I:ATP302 3.5 97.9 1.0
OE1 I:GLU190 3.7 101.4 1.0
OD2 I:ASP171 3.7 101.4 1.0
O2B I:ATP302 3.8 97.9 1.0
CA I:PRO227 3.8 101.4 1.0
N I:VAL228 4.1 101.4 1.0
O1G I:ATP302 4.1 97.9 1.0
NZ I:LYS45 4.1 101.4 1.0
C5' I:ATP302 4.1 97.9 1.0
O5' I:ATP302 4.1 97.9 1.0
CB I:PRO227 4.2 101.4 1.0
CG I:GLU190 4.3 101.4 1.0
O3B I:ATP302 4.3 97.9 1.0
CA I:VAL228 4.3 101.4 1.0
O3G I:ATP302 4.3 97.9 1.0
O1A I:ATP302 4.3 97.9 1.0
OD1 I:ASP171 4.5 101.4 1.0
PG I:ATP302 4.5 97.9 1.0
CG I:ASP171 4.5 101.4 1.0
CG1 I:VAL228 4.7 101.4 1.0

Magnesium binding site 9 out of 12 in 7z5j

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Magnesium binding site 9 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg303

b:97.1
occ:1.00
O2A J:ATP302 1.9 108.0 1.0
O1B J:ATP302 1.9 108.0 1.0
O1G J:ATP302 1.9 108.0 1.0
PG J:ATP302 3.1 108.0 1.0
PB J:ATP302 3.1 108.0 1.0
PA J:ATP302 3.3 108.0 1.0
O2 J:MOO301 3.3 112.9 1.0
O3B J:ATP302 3.5 108.0 1.0
O3G J:ATP302 3.6 108.0 1.0
O3A J:ATP302 3.7 108.0 1.0
NH2 J:ARG83 3.9 101.4 1.0
O5' J:ATP302 4.0 108.0 1.0
NH1 J:ARG168 4.1 101.4 1.0
OD2 J:ASP170 4.2 101.4 1.0
MO J:MOO301 4.2 112.9 1.0
O4 J:MOO301 4.2 112.9 1.0
NZ J:LYS42 4.3 101.4 1.0
NZ J:LYS189 4.3 103.3 1.0
O1 J:MOO301 4.4 112.9 1.0
O2G J:ATP302 4.4 108.0 1.0
O1A J:ATP302 4.5 108.0 1.0
O2B J:ATP302 4.5 108.0 1.0
O G:THR19 4.5 104.8 1.0
OD1 J:ASP170 4.5 101.4 1.0
OE1 J:GLU227 4.5 104.0 1.0
CG J:ASP170 4.6 101.4 1.0
OE1 G:GLN21 4.8 107.3 1.0
OG1 J:THR169 4.9 101.4 1.0

Magnesium binding site 10 out of 12 in 7z5j

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Magnesium binding site 10 out of 12 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg303

b:97.3
occ:1.00
O1B G:ATP302 1.8 97.6 1.0
O G:PRO227 1.9 101.4 1.0
O2A G:ATP302 1.9 97.6 1.0
OE2 G:GLU190 1.9 101.4 1.0
PB G:ATP302 3.0 97.6 1.0
C G:PRO227 3.1 101.4 1.0
CD G:GLU190 3.1 101.4 1.0
PA G:ATP302 3.2 97.6 1.0
O3A G:ATP302 3.5 97.6 1.0
OE1 G:GLU190 3.6 101.4 1.0
O2B G:ATP302 3.8 97.6 1.0
CA G:PRO227 3.9 101.4 1.0
OD2 G:ASP171 4.0 101.4 1.0
N G:VAL228 4.1 101.4 1.0
C5' G:ATP302 4.1 97.6 1.0
O1G G:ATP302 4.1 97.6 1.0
NZ G:LYS45 4.1 101.4 1.0
O5' G:ATP302 4.1 97.6 1.0
OD1 G:ASP171 4.2 101.4 1.0
CB G:PRO227 4.2 101.4 1.0
CG G:GLU190 4.3 101.4 1.0
O3B G:ATP302 4.3 97.6 1.0
CA G:VAL228 4.3 101.4 1.0
O3G G:ATP302 4.3 97.6 1.0
O1A G:ATP302 4.3 97.6 1.0
CG G:ASP171 4.5 101.4 1.0
PG G:ATP302 4.5 97.6 1.0
CG1 G:VAL228 4.7 101.4 1.0

Reference:

I.Aziz, S.Kaltwasser, K.Kayastha, R.Khera, J.Vonck, U.Ermler. The Molybdenum Storage Protein Forms and Deposits Distinct Polynuclear Tungsten Oxygen Aggregates. J.Inorg.Biochem. V. 234 11904 2022.
ISSN: ISSN 0162-0134
PubMed: 35779405
DOI: 10.1016/J.JINORGBIO.2022.111904
Page generated: Thu Oct 3 16:16:27 2024

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