Magnesium in PDB 7zdb: If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2)

The structure of If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2) also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Magnesium atom in the If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2) (pdb code 7zdb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2), PDB code: 7zdb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:63.0 occ:1.00 OE1 C:GLN421 1.7 55.6 1.0 O3B C:ADP603 1.9 67.1 1.0 OG C:SER380 2.1 64.6 1.0 CD C:GLN421 2.5 55.6 1.0 CB C:SER380 2.7 64.6 1.0 NE2 C:GLN421 3.0 55.6 1.0 PB C:ADP603 3.3 67.1 1.0 CG C:GLN421 3.8 55.6 1.0 O2B C:ADP603 4.0 67.1 1.0 O1B C:ADP603 4.0 67.1 1.0 CB C:GLN421 4.0 55.6 1.0 O3 C:PO3604 4.2 82.6 1.0 CA C:SER380 4.2 64.6 1.0 O3A C:ADP603 4.3 67.1 1.0 O2A C:ADP603 4.4 67.1 1.0 OD1 C:ASP499 4.5 63.9 1.0 OE1 C:GLU500 4.5 71.6 1.0 N C:SER380 4.6 64.6 1.0 OD2 C:ASP499 4.6 63.9 1.0 OE2 C:GLU500 4.7 71.6 1.0 CD C:GLU500 4.8 71.6 1.0 PA C:ADP603 4.8 67.1 1.0

Magnesium binding site 2 out of 2 in the If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:82.6 occ:1.00 O3B D:ATP602 2.0 79.0 1.0 OG D:SER390 2.2 65.7 1.0 O2B D:ATP602 2.3 79.0 1.0 CB D:SER390 2.4 65.7 1.0 PB D:ATP602 2.5 79.0 1.0 PG D:ATP602 3.0 79.0 1.0 O3A D:ATP602 3.0 79.0 1.0 O3G D:ATP602 3.1 79.0 1.0 O2G D:ATP602 3.4 79.0 1.0 CA D:SER390 3.5 65.7 1.0 N D:SER390 3.6 65.7 1.0 O1B D:ATP602 4.0 79.0 1.0 PA D:ATP602 4.0 79.0 1.0 O1A D:ATP602 4.1 79.0 1.0 O2A D:ATP602 4.2 79.0 1.0 O1G D:ATP602 4.3 79.0 1.0 C D:SER390 4.6 65.7 1.0 C D:LYS389 4.9 72.8 1.0 NZ D:LYS389 4.9 72.8 1.0 N D:SER391 4.9 61.5 1.0

D.Wu, S.Safarian. If(Heme/Bound) Conformation of Cyddc in Adp+Pi(Cydc)/Atp(Cydd) Bound State (Dataset-2) To Be Published.