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Magnesium in PDB 7zdf: If(Heme/Confined) Conformation of Cyddc in Amp-Pnp(Cydd) Bound State (Dataset-4)

Other elements in 7zdf:

The structure of If(Heme/Confined) Conformation of Cyddc in Amp-Pnp(Cydd) Bound State (Dataset-4) also contains other interesting chemical elements:

Iron (Fe) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the If(Heme/Confined) Conformation of Cyddc in Amp-Pnp(Cydd) Bound State (Dataset-4) (pdb code 7zdf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the If(Heme/Confined) Conformation of Cyddc in Amp-Pnp(Cydd) Bound State (Dataset-4), PDB code: 7zdf:

Magnesium binding site 1 out of 1 in 7zdf

Go back to Magnesium Binding Sites List in 7zdf
Magnesium binding site 1 out of 1 in the If(Heme/Confined) Conformation of Cyddc in Amp-Pnp(Cydd) Bound State (Dataset-4)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of If(Heme/Confined) Conformation of Cyddc in Amp-Pnp(Cydd) Bound State (Dataset-4) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:28.9
occ:1.00
OG D:SER390 2.2 29.5 1.0
O2G D:ANP603 2.2 36.6 1.0
O2B D:ANP603 2.2 36.6 1.0
OE1 D:GLN430 2.8 39.7 1.0
CB D:SER390 2.8 29.5 1.0
PB D:ANP603 3.3 36.6 1.0
PG D:ANP603 3.4 36.6 1.0
N3B D:ANP603 3.4 36.6 1.0
O1A D:ANP603 3.6 36.6 1.0
CD D:GLN430 3.7 39.7 1.0
CA D:SER390 3.9 29.5 1.0
N D:SER390 3.9 29.5 1.0
OD1 D:ASP510 4.0 34.9 1.0
NE2 D:GLN430 4.1 39.7 1.0
O3A D:ANP603 4.3 36.6 1.0
O1G D:ANP603 4.3 36.6 1.0
O3G D:ANP603 4.4 36.6 1.0
OD2 D:ASP510 4.4 34.9 1.0
O1B D:ANP603 4.5 36.6 1.0
PA D:ANP603 4.5 36.6 1.0
CG D:ASP510 4.6 34.9 1.0

Reference:

D.Wu, S.Safarian. If(Heme/Confined) Conformation of Cyddc in Amp-Pnp(Cydd) Bound State (Dataset-4) To Be Published.
Page generated: Thu Oct 3 16:43:33 2024

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