Magnesium in PDB 7zdi: Pucb-LH2 Complex From Rps. Palustris

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 33;

Binding sites:

The binding sites of Magnesium atom in the Pucb-LH2 Complex From Rps. Palustris (pdb code 7zdi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 33 binding sites of Magnesium where determined in the Pucb-LH2 Complex From Rps. Palustris, PDB code: 7zdi:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:28.8 occ:1.00 MG A:BCL101 0.0 28.8 1.0 NE2 A:HIS31 1.9 24.5 1.0 ND A:BCL101 2.0 26.4 1.0 NB A:BCL101 2.1 24.8 1.0 NC A:BCL101 2.1 25.6 1.0 NA A:BCL101 2.2 26.4 1.0 CE1 A:HIS31 2.9 24.4 1.0 CD2 A:HIS31 2.9 23.3 1.0 C4D A:BCL101 3.0 26.4 1.0 C4B A:BCL101 3.1 24.9 1.0 C1B A:BCL101 3.1 25.1 1.0 C1C A:BCL101 3.1 24.5 1.0 C1D A:BCL101 3.2 26.4 1.0 C4A A:BCL101 3.2 25.3 1.0 C4C A:BCL101 3.2 26.5 1.0 C1A A:BCL101 3.2 26.6 1.0 CHC A:BCL101 3.4 25.0 1.0 CHB A:BCL101 3.4 25.2 1.0 CHA A:BCL101 3.5 26.3 1.0 CHD A:BCL101 3.5 26.6 1.0 ND1 A:HIS31 4.0 23.5 1.0 CG A:HIS31 4.0 23.0 1.0 C3D A:BCL101 4.2 26.4 1.0 C2B A:BCL101 4.3 25.5 1.0 C3B A:BCL101 4.3 24.9 1.0 C2D A:BCL101 4.3 26.4 1.0 C2C A:BCL101 4.4 24.4 1.0 C3C A:BCL101 4.5 25.4 1.0 C3A A:BCL101 4.5 24.2 1.0 C2A A:BCL101 4.5 26.3 1.0 CMD B:BCL1802 4.6 21.2 1.0 CBD A:BCL101 4.9 26.4 1.0 CBC A:BCL101 5.0 25.6 1.0

Magnesium binding site 2 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:38.9 occ:1.00 MG A:BCL102 0.0 38.9 1.0 ON1 A:CXM1 2.0 36.7 1.0 ND A:BCL102 2.0 37.6 1.0 NB A:BCL102 2.1 37.1 1.0 NC A:BCL102 2.1 37.9 1.0 NA A:BCL102 2.2 39.9 1.0 C4D A:BCL102 3.0 38.2 1.0 C1B A:BCL102 3.1 36.1 1.0 C4B A:BCL102 3.1 36.3 1.0 C1C A:BCL102 3.1 36.7 1.0 C1D A:BCL102 3.1 38.0 1.0 C4A A:BCL102 3.1 38.5 1.0 CN A:CXM1 3.2 36.2 1.0 C4C A:BCL102 3.2 37.9 1.0 C1A A:BCL102 3.2 39.9 1.0 CHB A:BCL102 3.4 37.1 1.0 CHC A:BCL102 3.4 36.7 1.0 CHA A:BCL102 3.5 39.2 1.0 CHD A:BCL102 3.5 38.1 1.0 N A:CXM1 3.8 36.0 1.0 C12 B:BCL1802 4.0 31.4 1.0 C15 B:BCL1802 4.1 30.0 1.0 ON2 A:CXM1 4.2 37.8 1.0 C3D A:BCL102 4.2 38.4 1.0 C2B A:BCL102 4.3 35.0 1.0 C2D A:BCL102 4.3 38.5 1.0 C3B A:BCL102 4.3 36.0 1.0 C2C A:BCL102 4.4 36.3 1.0 C3A A:BCL102 4.4 39.1 1.0 C3C A:BCL102 4.5 38.4 1.0 C2A A:BCL102 4.5 40.5 1.0 C13 B:BCL1802 4.6 29.3 1.0 C14 B:BCL1802 4.9 29.9 1.0 CD1 B:ILE26 4.9 27.9 1.0 CBD A:BCL102 4.9 39.2 1.0

Magnesium binding site 3 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1802 b:32.0 occ:1.00 MG B:BCL1802 0.0 32.0 1.0 NE2 B:HIS40 1.9 26.1 1.0 ND B:BCL1802 2.0 28.3 1.0 NB B:BCL1802 2.1 28.1 1.0 NC B:BCL1802 2.1 29.4 1.0 NA B:BCL1802 2.2 27.7 1.0 CE1 B:HIS40 2.8 26.1 1.0 CD2 B:HIS40 3.0 25.8 1.0 C4D B:BCL1802 3.0 27.3 1.0 C4B B:BCL1802 3.1 28.6 1.0 C1B B:BCL1802 3.1 29.0 1.0 C1C B:BCL1802 3.1 27.6 1.0 C4A B:BCL1802 3.1 29.0 1.0 C1D B:BCL1802 3.2 26.7 1.0 C4C B:BCL1802 3.2 27.2 1.0 C1A B:BCL1802 3.2 27.3 1.0 CHC B:BCL1802 3.4 28.1 1.0 CHB B:BCL1802 3.4 29.5 1.0 CHA B:BCL1802 3.5 27.2 1.0 CHD B:BCL1802 3.5 26.8 1.0 ND1 B:HIS40 3.9 24.8 1.0 CG B:HIS40 4.1 24.6 1.0 CMB C:BCL102 4.2 35.4 1.0 C3D B:BCL1802 4.2 25.3 1.0 C2B B:BCL1802 4.3 29.9 1.0 C2D B:BCL1802 4.3 23.9 1.0 C3B B:BCL1802 4.3 30.5 1.0 C2C B:BCL1802 4.4 28.4 1.0 C3C B:BCL1802 4.5 26.5 1.0 C3A B:BCL1802 4.5 28.7 1.0 CBB C:BCL102 4.5 34.5 1.0 C2A B:BCL1802 4.5 27.6 1.0 CMD A:BCL101 4.9 27.5 1.0 CBD B:BCL1802 5.0 25.6 1.0

Magnesium binding site 4 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg1701 b:51.5 occ:1.00 MG S:BCL1701 0.0 51.5 1.0 ND S:BCL1701 2.0 55.4 1.0 NB S:BCL1701 2.1 44.2 1.0 NC S:BCL1701 2.1 49.5 1.0 NA S:BCL1701 2.2 54.7 1.0 O S:SER89 2.3 26.3 1.0 C4D S:BCL1701 3.0 58.2 1.0 C S:SER89 3.0 24.5 1.0 C1B S:BCL1701 3.1 43.7 1.0 C4B S:BCL1701 3.1 41.7 1.0 C1C S:BCL1701 3.1 45.5 1.0 C1D S:BCL1701 3.2 54.7 1.0 C4A S:BCL1701 3.2 50.5 1.0 C4C S:BCL1701 3.2 49.2 1.0 C1A S:BCL1701 3.2 58.0 1.0 CHB S:BCL1701 3.4 45.5 1.0 CHC S:BCL1701 3.4 41.9 1.0 CHA S:BCL1701 3.5 59.2 1.0 CHD S:BCL1701 3.5 51.4 1.0 CA S:SER89 3.7 22.7 1.0 CB S:SER89 3.8 21.0 1.0 N S:GLY90 3.9 24.6 1.0 C12 S:BCL1701 4.2 50.6 1.0 C3D S:BCL1701 4.3 59.4 1.0 C2B S:BCL1701 4.3 42.6 1.0 CA S:GLY90 4.3 24.5 1.0 C2D S:BCL1701 4.3 57.7 1.0 C3B S:BCL1701 4.3 40.9 1.0 C2C S:BCL1701 4.4 44.0 1.0 C3A S:BCL1701 4.5 53.5 1.0 C3C S:BCL1701 4.5 45.9 1.0 C2A S:BCL1701 4.5 59.2 1.0 C11 S:BCL1701 4.6 54.8 1.0 OG S:SER89 4.6 20.2 1.0 C10 S:BCL1701 4.7 60.2 1.0 CD B:ARG30 4.9 32.5 1.0 CBD S:BCL1701 5.0 62.4 1.0

Magnesium binding site 5 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg1702 b:53.8 occ:1.00 MG S:BCL1702 0.0 53.8 1.0 ND S:BCL1702 2.0 58.8 1.0 NB S:BCL1702 2.1 49.2 1.0 NC S:BCL1702 2.1 52.9 1.0 NA S:BCL1702 2.2 57.4 1.0 O S:SER9 2.3 35.4 1.0 C S:SER9 3.0 34.8 1.0 C4D S:BCL1702 3.0 61.5 1.0 C1B S:BCL1702 3.1 47.0 1.0 C4B S:BCL1702 3.1 46.4 1.0 C1C S:BCL1702 3.1 47.8 1.0 C4A S:BCL1702 3.2 53.8 1.0 C1D S:BCL1702 3.2 58.5 1.0 C4C S:BCL1702 3.2 53.2 1.0 C1A S:BCL1702 3.2 60.1 1.0 CHB S:BCL1702 3.4 49.5 1.0 CHC S:BCL1702 3.4 44.5 1.0 CHA S:BCL1702 3.5 61.8 1.0 CHD S:BCL1702 3.5 55.2 1.0 CA S:SER9 3.6 34.3 1.0 CB S:SER9 3.8 32.2 1.0 N S:GLY10 3.8 36.6 1.0 CA S:GLY10 4.2 35.1 1.0 C3D S:BCL1702 4.2 62.6 1.0 C2B S:BCL1702 4.3 44.8 1.0 C2D S:BCL1702 4.3 61.9 1.0 C3B S:BCL1702 4.3 45.1 1.0 C3A S:BCL1702 4.4 56.5 1.0 C2C S:BCL1702 4.4 47.7 1.0 C3C S:BCL1702 4.5 50.6 1.0 C2A S:BCL1702 4.5 60.2 1.0 OG S:SER9 4.6 32.6 1.0 C2 S:BCL1702 4.6 62.3 1.0 C6 S:BCL1702 4.6 54.9 1.0 CD J:ARG30 4.8 36.0 1.0 C5 S:BCL1702 4.8 58.6 1.0 NH1 J:ARG30 4.9 40.1 1.0 C S:GLY10 5.0 35.9 1.0 CBD S:BCL1702 5.0 63.8 1.0

Magnesium binding site 6 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg1703 b:56.9 occ:1.00 MG S:BCL1703 0.0 56.9 1.0 ND S:BCL1703 2.0 60.8 1.0 NB S:BCL1703 2.1 49.0 1.0 NC S:BCL1703 2.1 53.5 1.0 NA S:BCL1703 2.2 58.3 1.0 O S:SER25 2.2 25.9 1.0 C4D S:BCL1703 3.0 63.4 1.0 C S:SER25 3.0 26.4 1.0 C1B S:BCL1703 3.1 47.8 1.0 C4B S:BCL1703 3.1 46.0 1.0 C1C S:BCL1703 3.1 49.1 1.0 C1D S:BCL1703 3.1 60.0 1.0 C4A S:BCL1703 3.1 53.7 1.0 C4C S:BCL1703 3.2 54.5 1.0 C1A S:BCL1703 3.2 63.2 1.0 CHC S:BCL1703 3.4 45.4 1.0 CHB S:BCL1703 3.4 49.6 1.0 CHA S:BCL1703 3.5 64.7 1.0 CHD S:BCL1703 3.5 57.0 1.0 CA S:SER25 3.6 27.1 1.0 CB S:SER25 3.7 27.7 1.0 N S:GLY26 4.0 28.7 1.0 C3D S:BCL1703 4.2 64.4 1.0 C2B S:BCL1703 4.3 45.2 1.0 C2D S:BCL1703 4.3 62.9 1.0 C3B S:BCL1703 4.3 45.5 1.0 CA S:GLY26 4.4 26.7 1.0 C10 S:BCL1703 4.4 64.7 1.0 C2C S:BCL1703 4.4 49.1 1.0 C3A S:BCL1703 4.4 57.9 1.0 OG S:SER25 4.5 28.0 1.0 C3C S:BCL1703 4.5 51.5 1.0 C2A S:BCL1703 4.5 64.1 1.0 C12 S:BCL1703 4.5 55.0 1.0 C11 S:BCL1703 4.9 60.2 1.0 CD L:ARG30 4.9 36.8 1.0 CBD S:BCL1703 5.0 66.8 1.0

Magnesium binding site 7 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg1704 b:52.5 occ:1.00 MG S:BCL1704 0.0 52.5 1.0 ND S:BCL1704 2.0 58.7 1.0 NB S:BCL1704 2.1 46.2 1.0 NC S:BCL1704 2.1 50.2 1.0 NA S:BCL1704 2.2 55.9 1.0 O S:SER41 2.3 22.8 1.0 C S:SER41 3.0 20.3 1.0 C4D S:BCL1704 3.0 60.8 1.0 C1B S:BCL1704 3.1 44.6 1.0 C4B S:BCL1704 3.1 43.8 1.0 C1C S:BCL1704 3.1 46.4 1.0 C4A S:BCL1704 3.1 52.0 1.0 C1D S:BCL1704 3.2 58.1 1.0 C4C S:BCL1704 3.2 51.3 1.0 C1A S:BCL1704 3.2 60.1 1.0 CHB S:BCL1704 3.4 47.7 1.0 CHC S:BCL1704 3.4 43.8 1.0 CHD S:BCL1704 3.5 54.6 1.0 CHA S:BCL1704 3.5 61.2 1.0 CA S:SER41 3.5 19.8 1.0 CB S:SER41 3.7 19.8 1.0 N S:GLY42 3.8 21.1 1.0 CA S:GLY42 4.2 18.7 1.0 C3D S:BCL1704 4.2 61.4 1.0 C2B S:BCL1704 4.3 42.3 1.0 C2D S:BCL1704 4.3 60.2 1.0 C3B S:BCL1704 4.3 41.4 1.0 C12 S:BCL1704 4.3 55.3 1.0 C2C S:BCL1704 4.4 46.0 1.0 C3A S:BCL1704 4.4 55.0 1.0 C3C S:BCL1704 4.5 49.1 1.0 C2A S:BCL1704 4.5 60.7 1.0 OG S:SER41 4.5 21.1 1.0 CD N:ARG30 4.8 34.6 1.0 C10 S:BCL1704 4.9 64.8 1.0 NH1 N:ARG30 5.0 36.1 1.0 N S:SER41 5.0 22.4 1.0 CBD S:BCL1704 5.0 63.2 1.0 C S:GLY42 5.0 20.2 1.0

Magnesium binding site 8 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg1705 b:52.9 occ:1.00 MG S:BCL1705 0.0 52.9 1.0 ND S:BCL1705 2.0 58.4 1.0 NB S:BCL1705 2.1 47.3 1.0 NC S:BCL1705 2.1 51.7 1.0 NA S:BCL1705 2.2 56.0 1.0 O S:SER57 2.3 22.6 1.0 C S:SER57 2.9 17.7 1.0 C4D S:BCL1705 3.0 61.1 1.0 C1B S:BCL1705 3.1 46.2 1.0 C4B S:BCL1705 3.1 44.7 1.0 C1C S:BCL1705 3.1 48.3 1.0 C1D S:BCL1705 3.1 57.9 1.0 C4A S:BCL1705 3.1 53.0 1.0 C4C S:BCL1705 3.2 52.1 1.0 C1A S:BCL1705 3.2 59.8 1.0 CHB S:BCL1705 3.4 48.9 1.0 CHC S:BCL1705 3.4 45.3 1.0 CHD S:BCL1705 3.5 54.6 1.0 CHA S:BCL1705 3.5 62.6 1.0 CA S:SER57 3.5 18.0 1.0 C12 S:BCL1705 3.7 57.7 1.0 N S:GLY58 3.7 17.2 1.0 CB S:SER57 3.7 18.7 1.0 CA S:GLY58 4.1 16.1 1.0 C3D S:BCL1705 4.2 61.6 1.0 C2B S:BCL1705 4.3 43.7 1.0 C2D S:BCL1705 4.3 60.4 1.0 C3B S:BCL1705 4.3 42.3 1.0 C2C S:BCL1705 4.4 47.4 1.0 C3A S:BCL1705 4.5 56.7 1.0 C3C S:BCL1705 4.5 49.5 1.0 OG S:SER57 4.5 18.9 1.0 C2A S:BCL1705 4.5 60.6 1.0 C11 S:BCL1705 4.6 62.1 1.0 C13 S:BCL1705 4.7 55.9 1.0 C15 S:BCL1705 4.8 51.6 1.0 CD P:ARG30 4.9 36.8 1.0 N S:SER57 4.9 20.3 1.0 NH1 P:ARG30 5.0 38.5 1.0 CBD S:BCL1705 5.0 64.4 1.0 C S:GLY58 5.0 16.9 1.0

Magnesium binding site 9 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg1706 b:49.2 occ:1.00 MG S:BCL1706 0.0 49.2 1.0 ND S:BCL1706 2.0 55.2 1.0 NB S:BCL1706 2.1 44.0 1.0 NC S:BCL1706 2.1 48.6 1.0 NA S:BCL1706 2.2 53.7 1.0 O S:SER73 2.3 22.2 1.0 C S:SER73 3.0 19.6 1.0 C4D S:BCL1706 3.0 57.4 1.0 C1B S:BCL1706 3.1 43.3 1.0 C4B S:BCL1706 3.1 41.0 1.0 C1C S:BCL1706 3.1 45.3 1.0 C4A S:BCL1706 3.1 50.1 1.0 C1D S:BCL1706 3.1 53.9 1.0 C4C S:BCL1706 3.2 48.3 1.0 C1A S:BCL1706 3.2 56.5 1.0 CHB S:BCL1706 3.4 45.7 1.0 CHC S:BCL1706 3.4 41.4 1.0 CHD S:BCL1706 3.5 50.7 1.0 CHA S:BCL1706 3.5 58.3 1.0 CA S:SER73 3.7 18.9 1.0 CB S:SER73 3.8 16.4 1.0 N S:GLY74 3.8 20.1 1.0 CA S:GLY74 4.2 18.9 1.0 C12 S:BCL1706 4.2 53.0 1.0 C3D S:BCL1706 4.2 58.2 1.0 C2B S:BCL1706 4.3 41.3 1.0 C2D S:BCL1706 4.3 56.1 1.0 C3B S:BCL1706 4.3 39.8 1.0 C3A S:BCL1706 4.4 53.3 1.0 C2C S:BCL1706 4.4 44.0 1.0 C3C S:BCL1706 4.5 46.2 1.0 C2A S:BCL1706 4.5 58.4 1.0 OG S:SER73 4.5 14.1 1.0 CD R:ARG30 4.9 32.8 1.0 C10 S:BCL1706 4.9 63.3 1.0 NH1 R:ARG30 4.9 36.1 1.0 CBD S:BCL1706 5.0 61.0 1.0

Magnesium binding site 10 out of 33 in the Pucb-LH2 Complex From Rps. Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:56.5 occ:1.00 MG C:BCL101 0.0 56.5 1.0 ON1 C:CXM1 2.0 53.3 1.0 ND C:BCL101 2.0 53.8 1.0 NB C:BCL101 2.1 53.1 1.0 NC C:BCL101 2.1 54.7 1.0 NA C:BCL101 2.2 55.8 1.0 C4D C:BCL101 3.0 54.5 1.0 C1B C:BCL101 3.1 52.3 1.0 C4B C:BCL101 3.1 53.2 1.0 C1C C:BCL101 3.1 53.4 1.0 C1D C:BCL101 3.1 54.1 1.0 C4A C:BCL101 3.1 54.9 1.0 C4C C:BCL101 3.2 54.5 1.0 CN C:CXM1 3.2 52.7 1.0 C1A C:BCL101 3.2 55.9 1.0 CHB C:BCL101 3.4 53.6 1.0 CHC C:BCL101 3.4 53.9 1.0 CHA C:BCL101 3.5 56.0 1.0 CHD C:BCL101 3.5 54.3 1.0 N C:CXM1 3.8 51.6 1.0 C15 D:BCL101 4.2 34.1 1.0 C3D C:BCL101 4.2 53.6 1.0 ON2 C:CXM1 4.2 54.4 1.0 C12 D:BCL101 4.2 37.3 1.0 C2B C:BCL101 4.3 51.3 1.0 C2D C:BCL101 4.3 53.6 1.0 C3B C:BCL101 4.3 52.9 1.0 C2C C:BCL101 4.4 52.9 1.0 C3C C:BCL101 4.4 55.5 1.0 C3A C:BCL101 4.4 54.5 1.0 C2A C:BCL101 4.5 55.5 1.0 C14 D:BCL101 4.6 35.0 1.0 C13 D:BCL101 4.6 35.0 1.0 CD1 D:ILE26 4.9 32.3 1.0 CBD C:BCL101 4.9 54.3 1.0

P.Qian, C.T.Nguyen-Phan, A.T.Gardiner, T.I.Croll, A.W.Roszak, J.Southall, P.J.Jackson, C.Vasilev, P.Castro-Hartmann, K.Sader, C.N.Hunter, R.J.Cogdell. Cryo-Em Structures of Light-Harvesting 2 Complexes From Rhodopseudomonas Palustris Reveal the Molecular Origin of Absorption Tuning. Proc.Natl.Acad.Sci.Usa V. 119 09119 2022.
ISSN: ESSN 1091-6490
PubMed: 36251992
DOI: 10.1073/PNAS.2210109119