Magnesium in PDB 7zdi: Pucb-LH2 Complex From Rps. Palustris
Magnesium Binding Sites:
Magnesium binding site 1 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 1 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:28.8
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
28.8
|
1.0
|
NE2
|
A:HIS31
|
1.9
|
24.5
|
1.0
|
ND
|
A:BCL101
|
2.0
|
26.4
|
1.0
|
NB
|
A:BCL101
|
2.1
|
24.8
|
1.0
|
NC
|
A:BCL101
|
2.1
|
25.6
|
1.0
|
NA
|
A:BCL101
|
2.2
|
26.4
|
1.0
|
CE1
|
A:HIS31
|
2.9
|
24.4
|
1.0
|
CD2
|
A:HIS31
|
2.9
|
23.3
|
1.0
|
C4D
|
A:BCL101
|
3.0
|
26.4
|
1.0
|
C4B
|
A:BCL101
|
3.1
|
24.9
|
1.0
|
C1B
|
A:BCL101
|
3.1
|
25.1
|
1.0
|
C1C
|
A:BCL101
|
3.1
|
24.5
|
1.0
|
C1D
|
A:BCL101
|
3.2
|
26.4
|
1.0
|
C4A
|
A:BCL101
|
3.2
|
25.3
|
1.0
|
C4C
|
A:BCL101
|
3.2
|
26.5
|
1.0
|
C1A
|
A:BCL101
|
3.2
|
26.6
|
1.0
|
CHC
|
A:BCL101
|
3.4
|
25.0
|
1.0
|
CHB
|
A:BCL101
|
3.4
|
25.2
|
1.0
|
CHA
|
A:BCL101
|
3.5
|
26.3
|
1.0
|
CHD
|
A:BCL101
|
3.5
|
26.6
|
1.0
|
ND1
|
A:HIS31
|
4.0
|
23.5
|
1.0
|
CG
|
A:HIS31
|
4.0
|
23.0
|
1.0
|
C3D
|
A:BCL101
|
4.2
|
26.4
|
1.0
|
C2B
|
A:BCL101
|
4.3
|
25.5
|
1.0
|
C3B
|
A:BCL101
|
4.3
|
24.9
|
1.0
|
C2D
|
A:BCL101
|
4.3
|
26.4
|
1.0
|
C2C
|
A:BCL101
|
4.4
|
24.4
|
1.0
|
C3C
|
A:BCL101
|
4.5
|
25.4
|
1.0
|
C3A
|
A:BCL101
|
4.5
|
24.2
|
1.0
|
C2A
|
A:BCL101
|
4.5
|
26.3
|
1.0
|
CMD
|
B:BCL1802
|
4.6
|
21.2
|
1.0
|
CBD
|
A:BCL101
|
4.9
|
26.4
|
1.0
|
CBC
|
A:BCL101
|
5.0
|
25.6
|
1.0
|
|
Magnesium binding site 2 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 2 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg102
b:38.9
occ:1.00
|
MG
|
A:BCL102
|
0.0
|
38.9
|
1.0
|
ON1
|
A:CXM1
|
2.0
|
36.7
|
1.0
|
ND
|
A:BCL102
|
2.0
|
37.6
|
1.0
|
NB
|
A:BCL102
|
2.1
|
37.1
|
1.0
|
NC
|
A:BCL102
|
2.1
|
37.9
|
1.0
|
NA
|
A:BCL102
|
2.2
|
39.9
|
1.0
|
C4D
|
A:BCL102
|
3.0
|
38.2
|
1.0
|
C1B
|
A:BCL102
|
3.1
|
36.1
|
1.0
|
C4B
|
A:BCL102
|
3.1
|
36.3
|
1.0
|
C1C
|
A:BCL102
|
3.1
|
36.7
|
1.0
|
C1D
|
A:BCL102
|
3.1
|
38.0
|
1.0
|
C4A
|
A:BCL102
|
3.1
|
38.5
|
1.0
|
CN
|
A:CXM1
|
3.2
|
36.2
|
1.0
|
C4C
|
A:BCL102
|
3.2
|
37.9
|
1.0
|
C1A
|
A:BCL102
|
3.2
|
39.9
|
1.0
|
CHB
|
A:BCL102
|
3.4
|
37.1
|
1.0
|
CHC
|
A:BCL102
|
3.4
|
36.7
|
1.0
|
CHA
|
A:BCL102
|
3.5
|
39.2
|
1.0
|
CHD
|
A:BCL102
|
3.5
|
38.1
|
1.0
|
N
|
A:CXM1
|
3.8
|
36.0
|
1.0
|
C12
|
B:BCL1802
|
4.0
|
31.4
|
1.0
|
C15
|
B:BCL1802
|
4.1
|
30.0
|
1.0
|
ON2
|
A:CXM1
|
4.2
|
37.8
|
1.0
|
C3D
|
A:BCL102
|
4.2
|
38.4
|
1.0
|
C2B
|
A:BCL102
|
4.3
|
35.0
|
1.0
|
C2D
|
A:BCL102
|
4.3
|
38.5
|
1.0
|
C3B
|
A:BCL102
|
4.3
|
36.0
|
1.0
|
C2C
|
A:BCL102
|
4.4
|
36.3
|
1.0
|
C3A
|
A:BCL102
|
4.4
|
39.1
|
1.0
|
C3C
|
A:BCL102
|
4.5
|
38.4
|
1.0
|
C2A
|
A:BCL102
|
4.5
|
40.5
|
1.0
|
C13
|
B:BCL1802
|
4.6
|
29.3
|
1.0
|
C14
|
B:BCL1802
|
4.9
|
29.9
|
1.0
|
CD1
|
B:ILE26
|
4.9
|
27.9
|
1.0
|
CBD
|
A:BCL102
|
4.9
|
39.2
|
1.0
|
|
Magnesium binding site 3 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 3 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1802
b:32.0
occ:1.00
|
MG
|
B:BCL1802
|
0.0
|
32.0
|
1.0
|
NE2
|
B:HIS40
|
1.9
|
26.1
|
1.0
|
ND
|
B:BCL1802
|
2.0
|
28.3
|
1.0
|
NB
|
B:BCL1802
|
2.1
|
28.1
|
1.0
|
NC
|
B:BCL1802
|
2.1
|
29.4
|
1.0
|
NA
|
B:BCL1802
|
2.2
|
27.7
|
1.0
|
CE1
|
B:HIS40
|
2.8
|
26.1
|
1.0
|
CD2
|
B:HIS40
|
3.0
|
25.8
|
1.0
|
C4D
|
B:BCL1802
|
3.0
|
27.3
|
1.0
|
C4B
|
B:BCL1802
|
3.1
|
28.6
|
1.0
|
C1B
|
B:BCL1802
|
3.1
|
29.0
|
1.0
|
C1C
|
B:BCL1802
|
3.1
|
27.6
|
1.0
|
C4A
|
B:BCL1802
|
3.1
|
29.0
|
1.0
|
C1D
|
B:BCL1802
|
3.2
|
26.7
|
1.0
|
C4C
|
B:BCL1802
|
3.2
|
27.2
|
1.0
|
C1A
|
B:BCL1802
|
3.2
|
27.3
|
1.0
|
CHC
|
B:BCL1802
|
3.4
|
28.1
|
1.0
|
CHB
|
B:BCL1802
|
3.4
|
29.5
|
1.0
|
CHA
|
B:BCL1802
|
3.5
|
27.2
|
1.0
|
CHD
|
B:BCL1802
|
3.5
|
26.8
|
1.0
|
ND1
|
B:HIS40
|
3.9
|
24.8
|
1.0
|
CG
|
B:HIS40
|
4.1
|
24.6
|
1.0
|
CMB
|
C:BCL102
|
4.2
|
35.4
|
1.0
|
C3D
|
B:BCL1802
|
4.2
|
25.3
|
1.0
|
C2B
|
B:BCL1802
|
4.3
|
29.9
|
1.0
|
C2D
|
B:BCL1802
|
4.3
|
23.9
|
1.0
|
C3B
|
B:BCL1802
|
4.3
|
30.5
|
1.0
|
C2C
|
B:BCL1802
|
4.4
|
28.4
|
1.0
|
C3C
|
B:BCL1802
|
4.5
|
26.5
|
1.0
|
C3A
|
B:BCL1802
|
4.5
|
28.7
|
1.0
|
CBB
|
C:BCL102
|
4.5
|
34.5
|
1.0
|
C2A
|
B:BCL1802
|
4.5
|
27.6
|
1.0
|
CMD
|
A:BCL101
|
4.9
|
27.5
|
1.0
|
CBD
|
B:BCL1802
|
5.0
|
25.6
|
1.0
|
|
Magnesium binding site 4 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 4 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg1701
b:51.5
occ:1.00
|
MG
|
S:BCL1701
|
0.0
|
51.5
|
1.0
|
ND
|
S:BCL1701
|
2.0
|
55.4
|
1.0
|
NB
|
S:BCL1701
|
2.1
|
44.2
|
1.0
|
NC
|
S:BCL1701
|
2.1
|
49.5
|
1.0
|
NA
|
S:BCL1701
|
2.2
|
54.7
|
1.0
|
O
|
S:SER89
|
2.3
|
26.3
|
1.0
|
C4D
|
S:BCL1701
|
3.0
|
58.2
|
1.0
|
C
|
S:SER89
|
3.0
|
24.5
|
1.0
|
C1B
|
S:BCL1701
|
3.1
|
43.7
|
1.0
|
C4B
|
S:BCL1701
|
3.1
|
41.7
|
1.0
|
C1C
|
S:BCL1701
|
3.1
|
45.5
|
1.0
|
C1D
|
S:BCL1701
|
3.2
|
54.7
|
1.0
|
C4A
|
S:BCL1701
|
3.2
|
50.5
|
1.0
|
C4C
|
S:BCL1701
|
3.2
|
49.2
|
1.0
|
C1A
|
S:BCL1701
|
3.2
|
58.0
|
1.0
|
CHB
|
S:BCL1701
|
3.4
|
45.5
|
1.0
|
CHC
|
S:BCL1701
|
3.4
|
41.9
|
1.0
|
CHA
|
S:BCL1701
|
3.5
|
59.2
|
1.0
|
CHD
|
S:BCL1701
|
3.5
|
51.4
|
1.0
|
CA
|
S:SER89
|
3.7
|
22.7
|
1.0
|
CB
|
S:SER89
|
3.8
|
21.0
|
1.0
|
N
|
S:GLY90
|
3.9
|
24.6
|
1.0
|
C12
|
S:BCL1701
|
4.2
|
50.6
|
1.0
|
C3D
|
S:BCL1701
|
4.3
|
59.4
|
1.0
|
C2B
|
S:BCL1701
|
4.3
|
42.6
|
1.0
|
CA
|
S:GLY90
|
4.3
|
24.5
|
1.0
|
C2D
|
S:BCL1701
|
4.3
|
57.7
|
1.0
|
C3B
|
S:BCL1701
|
4.3
|
40.9
|
1.0
|
C2C
|
S:BCL1701
|
4.4
|
44.0
|
1.0
|
C3A
|
S:BCL1701
|
4.5
|
53.5
|
1.0
|
C3C
|
S:BCL1701
|
4.5
|
45.9
|
1.0
|
C2A
|
S:BCL1701
|
4.5
|
59.2
|
1.0
|
C11
|
S:BCL1701
|
4.6
|
54.8
|
1.0
|
OG
|
S:SER89
|
4.6
|
20.2
|
1.0
|
C10
|
S:BCL1701
|
4.7
|
60.2
|
1.0
|
CD
|
B:ARG30
|
4.9
|
32.5
|
1.0
|
CBD
|
S:BCL1701
|
5.0
|
62.4
|
1.0
|
|
Magnesium binding site 5 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 5 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg1702
b:53.8
occ:1.00
|
MG
|
S:BCL1702
|
0.0
|
53.8
|
1.0
|
ND
|
S:BCL1702
|
2.0
|
58.8
|
1.0
|
NB
|
S:BCL1702
|
2.1
|
49.2
|
1.0
|
NC
|
S:BCL1702
|
2.1
|
52.9
|
1.0
|
NA
|
S:BCL1702
|
2.2
|
57.4
|
1.0
|
O
|
S:SER9
|
2.3
|
35.4
|
1.0
|
C
|
S:SER9
|
3.0
|
34.8
|
1.0
|
C4D
|
S:BCL1702
|
3.0
|
61.5
|
1.0
|
C1B
|
S:BCL1702
|
3.1
|
47.0
|
1.0
|
C4B
|
S:BCL1702
|
3.1
|
46.4
|
1.0
|
C1C
|
S:BCL1702
|
3.1
|
47.8
|
1.0
|
C4A
|
S:BCL1702
|
3.2
|
53.8
|
1.0
|
C1D
|
S:BCL1702
|
3.2
|
58.5
|
1.0
|
C4C
|
S:BCL1702
|
3.2
|
53.2
|
1.0
|
C1A
|
S:BCL1702
|
3.2
|
60.1
|
1.0
|
CHB
|
S:BCL1702
|
3.4
|
49.5
|
1.0
|
CHC
|
S:BCL1702
|
3.4
|
44.5
|
1.0
|
CHA
|
S:BCL1702
|
3.5
|
61.8
|
1.0
|
CHD
|
S:BCL1702
|
3.5
|
55.2
|
1.0
|
CA
|
S:SER9
|
3.6
|
34.3
|
1.0
|
CB
|
S:SER9
|
3.8
|
32.2
|
1.0
|
N
|
S:GLY10
|
3.8
|
36.6
|
1.0
|
CA
|
S:GLY10
|
4.2
|
35.1
|
1.0
|
C3D
|
S:BCL1702
|
4.2
|
62.6
|
1.0
|
C2B
|
S:BCL1702
|
4.3
|
44.8
|
1.0
|
C2D
|
S:BCL1702
|
4.3
|
61.9
|
1.0
|
C3B
|
S:BCL1702
|
4.3
|
45.1
|
1.0
|
C3A
|
S:BCL1702
|
4.4
|
56.5
|
1.0
|
C2C
|
S:BCL1702
|
4.4
|
47.7
|
1.0
|
C3C
|
S:BCL1702
|
4.5
|
50.6
|
1.0
|
C2A
|
S:BCL1702
|
4.5
|
60.2
|
1.0
|
OG
|
S:SER9
|
4.6
|
32.6
|
1.0
|
C2
|
S:BCL1702
|
4.6
|
62.3
|
1.0
|
C6
|
S:BCL1702
|
4.6
|
54.9
|
1.0
|
CD
|
J:ARG30
|
4.8
|
36.0
|
1.0
|
C5
|
S:BCL1702
|
4.8
|
58.6
|
1.0
|
NH1
|
J:ARG30
|
4.9
|
40.1
|
1.0
|
C
|
S:GLY10
|
5.0
|
35.9
|
1.0
|
CBD
|
S:BCL1702
|
5.0
|
63.8
|
1.0
|
|
Magnesium binding site 6 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 6 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg1703
b:56.9
occ:1.00
|
MG
|
S:BCL1703
|
0.0
|
56.9
|
1.0
|
ND
|
S:BCL1703
|
2.0
|
60.8
|
1.0
|
NB
|
S:BCL1703
|
2.1
|
49.0
|
1.0
|
NC
|
S:BCL1703
|
2.1
|
53.5
|
1.0
|
NA
|
S:BCL1703
|
2.2
|
58.3
|
1.0
|
O
|
S:SER25
|
2.2
|
25.9
|
1.0
|
C4D
|
S:BCL1703
|
3.0
|
63.4
|
1.0
|
C
|
S:SER25
|
3.0
|
26.4
|
1.0
|
C1B
|
S:BCL1703
|
3.1
|
47.8
|
1.0
|
C4B
|
S:BCL1703
|
3.1
|
46.0
|
1.0
|
C1C
|
S:BCL1703
|
3.1
|
49.1
|
1.0
|
C1D
|
S:BCL1703
|
3.1
|
60.0
|
1.0
|
C4A
|
S:BCL1703
|
3.1
|
53.7
|
1.0
|
C4C
|
S:BCL1703
|
3.2
|
54.5
|
1.0
|
C1A
|
S:BCL1703
|
3.2
|
63.2
|
1.0
|
CHC
|
S:BCL1703
|
3.4
|
45.4
|
1.0
|
CHB
|
S:BCL1703
|
3.4
|
49.6
|
1.0
|
CHA
|
S:BCL1703
|
3.5
|
64.7
|
1.0
|
CHD
|
S:BCL1703
|
3.5
|
57.0
|
1.0
|
CA
|
S:SER25
|
3.6
|
27.1
|
1.0
|
CB
|
S:SER25
|
3.7
|
27.7
|
1.0
|
N
|
S:GLY26
|
4.0
|
28.7
|
1.0
|
C3D
|
S:BCL1703
|
4.2
|
64.4
|
1.0
|
C2B
|
S:BCL1703
|
4.3
|
45.2
|
1.0
|
C2D
|
S:BCL1703
|
4.3
|
62.9
|
1.0
|
C3B
|
S:BCL1703
|
4.3
|
45.5
|
1.0
|
CA
|
S:GLY26
|
4.4
|
26.7
|
1.0
|
C10
|
S:BCL1703
|
4.4
|
64.7
|
1.0
|
C2C
|
S:BCL1703
|
4.4
|
49.1
|
1.0
|
C3A
|
S:BCL1703
|
4.4
|
57.9
|
1.0
|
OG
|
S:SER25
|
4.5
|
28.0
|
1.0
|
C3C
|
S:BCL1703
|
4.5
|
51.5
|
1.0
|
C2A
|
S:BCL1703
|
4.5
|
64.1
|
1.0
|
C12
|
S:BCL1703
|
4.5
|
55.0
|
1.0
|
C11
|
S:BCL1703
|
4.9
|
60.2
|
1.0
|
CD
|
L:ARG30
|
4.9
|
36.8
|
1.0
|
CBD
|
S:BCL1703
|
5.0
|
66.8
|
1.0
|
|
Magnesium binding site 7 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 7 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg1704
b:52.5
occ:1.00
|
MG
|
S:BCL1704
|
0.0
|
52.5
|
1.0
|
ND
|
S:BCL1704
|
2.0
|
58.7
|
1.0
|
NB
|
S:BCL1704
|
2.1
|
46.2
|
1.0
|
NC
|
S:BCL1704
|
2.1
|
50.2
|
1.0
|
NA
|
S:BCL1704
|
2.2
|
55.9
|
1.0
|
O
|
S:SER41
|
2.3
|
22.8
|
1.0
|
C
|
S:SER41
|
3.0
|
20.3
|
1.0
|
C4D
|
S:BCL1704
|
3.0
|
60.8
|
1.0
|
C1B
|
S:BCL1704
|
3.1
|
44.6
|
1.0
|
C4B
|
S:BCL1704
|
3.1
|
43.8
|
1.0
|
C1C
|
S:BCL1704
|
3.1
|
46.4
|
1.0
|
C4A
|
S:BCL1704
|
3.1
|
52.0
|
1.0
|
C1D
|
S:BCL1704
|
3.2
|
58.1
|
1.0
|
C4C
|
S:BCL1704
|
3.2
|
51.3
|
1.0
|
C1A
|
S:BCL1704
|
3.2
|
60.1
|
1.0
|
CHB
|
S:BCL1704
|
3.4
|
47.7
|
1.0
|
CHC
|
S:BCL1704
|
3.4
|
43.8
|
1.0
|
CHD
|
S:BCL1704
|
3.5
|
54.6
|
1.0
|
CHA
|
S:BCL1704
|
3.5
|
61.2
|
1.0
|
CA
|
S:SER41
|
3.5
|
19.8
|
1.0
|
CB
|
S:SER41
|
3.7
|
19.8
|
1.0
|
N
|
S:GLY42
|
3.8
|
21.1
|
1.0
|
CA
|
S:GLY42
|
4.2
|
18.7
|
1.0
|
C3D
|
S:BCL1704
|
4.2
|
61.4
|
1.0
|
C2B
|
S:BCL1704
|
4.3
|
42.3
|
1.0
|
C2D
|
S:BCL1704
|
4.3
|
60.2
|
1.0
|
C3B
|
S:BCL1704
|
4.3
|
41.4
|
1.0
|
C12
|
S:BCL1704
|
4.3
|
55.3
|
1.0
|
C2C
|
S:BCL1704
|
4.4
|
46.0
|
1.0
|
C3A
|
S:BCL1704
|
4.4
|
55.0
|
1.0
|
C3C
|
S:BCL1704
|
4.5
|
49.1
|
1.0
|
C2A
|
S:BCL1704
|
4.5
|
60.7
|
1.0
|
OG
|
S:SER41
|
4.5
|
21.1
|
1.0
|
CD
|
N:ARG30
|
4.8
|
34.6
|
1.0
|
C10
|
S:BCL1704
|
4.9
|
64.8
|
1.0
|
NH1
|
N:ARG30
|
5.0
|
36.1
|
1.0
|
N
|
S:SER41
|
5.0
|
22.4
|
1.0
|
CBD
|
S:BCL1704
|
5.0
|
63.2
|
1.0
|
C
|
S:GLY42
|
5.0
|
20.2
|
1.0
|
|
Magnesium binding site 8 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 8 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg1705
b:52.9
occ:1.00
|
MG
|
S:BCL1705
|
0.0
|
52.9
|
1.0
|
ND
|
S:BCL1705
|
2.0
|
58.4
|
1.0
|
NB
|
S:BCL1705
|
2.1
|
47.3
|
1.0
|
NC
|
S:BCL1705
|
2.1
|
51.7
|
1.0
|
NA
|
S:BCL1705
|
2.2
|
56.0
|
1.0
|
O
|
S:SER57
|
2.3
|
22.6
|
1.0
|
C
|
S:SER57
|
2.9
|
17.7
|
1.0
|
C4D
|
S:BCL1705
|
3.0
|
61.1
|
1.0
|
C1B
|
S:BCL1705
|
3.1
|
46.2
|
1.0
|
C4B
|
S:BCL1705
|
3.1
|
44.7
|
1.0
|
C1C
|
S:BCL1705
|
3.1
|
48.3
|
1.0
|
C1D
|
S:BCL1705
|
3.1
|
57.9
|
1.0
|
C4A
|
S:BCL1705
|
3.1
|
53.0
|
1.0
|
C4C
|
S:BCL1705
|
3.2
|
52.1
|
1.0
|
C1A
|
S:BCL1705
|
3.2
|
59.8
|
1.0
|
CHB
|
S:BCL1705
|
3.4
|
48.9
|
1.0
|
CHC
|
S:BCL1705
|
3.4
|
45.3
|
1.0
|
CHD
|
S:BCL1705
|
3.5
|
54.6
|
1.0
|
CHA
|
S:BCL1705
|
3.5
|
62.6
|
1.0
|
CA
|
S:SER57
|
3.5
|
18.0
|
1.0
|
C12
|
S:BCL1705
|
3.7
|
57.7
|
1.0
|
N
|
S:GLY58
|
3.7
|
17.2
|
1.0
|
CB
|
S:SER57
|
3.7
|
18.7
|
1.0
|
CA
|
S:GLY58
|
4.1
|
16.1
|
1.0
|
C3D
|
S:BCL1705
|
4.2
|
61.6
|
1.0
|
C2B
|
S:BCL1705
|
4.3
|
43.7
|
1.0
|
C2D
|
S:BCL1705
|
4.3
|
60.4
|
1.0
|
C3B
|
S:BCL1705
|
4.3
|
42.3
|
1.0
|
C2C
|
S:BCL1705
|
4.4
|
47.4
|
1.0
|
C3A
|
S:BCL1705
|
4.5
|
56.7
|
1.0
|
C3C
|
S:BCL1705
|
4.5
|
49.5
|
1.0
|
OG
|
S:SER57
|
4.5
|
18.9
|
1.0
|
C2A
|
S:BCL1705
|
4.5
|
60.6
|
1.0
|
C11
|
S:BCL1705
|
4.6
|
62.1
|
1.0
|
C13
|
S:BCL1705
|
4.7
|
55.9
|
1.0
|
C15
|
S:BCL1705
|
4.8
|
51.6
|
1.0
|
CD
|
P:ARG30
|
4.9
|
36.8
|
1.0
|
N
|
S:SER57
|
4.9
|
20.3
|
1.0
|
NH1
|
P:ARG30
|
5.0
|
38.5
|
1.0
|
CBD
|
S:BCL1705
|
5.0
|
64.4
|
1.0
|
C
|
S:GLY58
|
5.0
|
16.9
|
1.0
|
|
Magnesium binding site 9 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 9 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg1706
b:49.2
occ:1.00
|
MG
|
S:BCL1706
|
0.0
|
49.2
|
1.0
|
ND
|
S:BCL1706
|
2.0
|
55.2
|
1.0
|
NB
|
S:BCL1706
|
2.1
|
44.0
|
1.0
|
NC
|
S:BCL1706
|
2.1
|
48.6
|
1.0
|
NA
|
S:BCL1706
|
2.2
|
53.7
|
1.0
|
O
|
S:SER73
|
2.3
|
22.2
|
1.0
|
C
|
S:SER73
|
3.0
|
19.6
|
1.0
|
C4D
|
S:BCL1706
|
3.0
|
57.4
|
1.0
|
C1B
|
S:BCL1706
|
3.1
|
43.3
|
1.0
|
C4B
|
S:BCL1706
|
3.1
|
41.0
|
1.0
|
C1C
|
S:BCL1706
|
3.1
|
45.3
|
1.0
|
C4A
|
S:BCL1706
|
3.1
|
50.1
|
1.0
|
C1D
|
S:BCL1706
|
3.1
|
53.9
|
1.0
|
C4C
|
S:BCL1706
|
3.2
|
48.3
|
1.0
|
C1A
|
S:BCL1706
|
3.2
|
56.5
|
1.0
|
CHB
|
S:BCL1706
|
3.4
|
45.7
|
1.0
|
CHC
|
S:BCL1706
|
3.4
|
41.4
|
1.0
|
CHD
|
S:BCL1706
|
3.5
|
50.7
|
1.0
|
CHA
|
S:BCL1706
|
3.5
|
58.3
|
1.0
|
CA
|
S:SER73
|
3.7
|
18.9
|
1.0
|
CB
|
S:SER73
|
3.8
|
16.4
|
1.0
|
N
|
S:GLY74
|
3.8
|
20.1
|
1.0
|
CA
|
S:GLY74
|
4.2
|
18.9
|
1.0
|
C12
|
S:BCL1706
|
4.2
|
53.0
|
1.0
|
C3D
|
S:BCL1706
|
4.2
|
58.2
|
1.0
|
C2B
|
S:BCL1706
|
4.3
|
41.3
|
1.0
|
C2D
|
S:BCL1706
|
4.3
|
56.1
|
1.0
|
C3B
|
S:BCL1706
|
4.3
|
39.8
|
1.0
|
C3A
|
S:BCL1706
|
4.4
|
53.3
|
1.0
|
C2C
|
S:BCL1706
|
4.4
|
44.0
|
1.0
|
C3C
|
S:BCL1706
|
4.5
|
46.2
|
1.0
|
C2A
|
S:BCL1706
|
4.5
|
58.4
|
1.0
|
OG
|
S:SER73
|
4.5
|
14.1
|
1.0
|
CD
|
R:ARG30
|
4.9
|
32.8
|
1.0
|
C10
|
S:BCL1706
|
4.9
|
63.3
|
1.0
|
NH1
|
R:ARG30
|
4.9
|
36.1
|
1.0
|
CBD
|
S:BCL1706
|
5.0
|
61.0
|
1.0
|
|
Magnesium binding site 10 out
of 33 in 7zdi
Go back to
Magnesium Binding Sites List in 7zdi
Magnesium binding site 10 out
of 33 in the Pucb-LH2 Complex From Rps. Palustris
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Pucb-LH2 Complex From Rps. Palustris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg101
b:56.5
occ:1.00
|
MG
|
C:BCL101
|
0.0
|
56.5
|
1.0
|
ON1
|
C:CXM1
|
2.0
|
53.3
|
1.0
|
ND
|
C:BCL101
|
2.0
|
53.8
|
1.0
|
NB
|
C:BCL101
|
2.1
|
53.1
|
1.0
|
NC
|
C:BCL101
|
2.1
|
54.7
|
1.0
|
NA
|
C:BCL101
|
2.2
|
55.8
|
1.0
|
C4D
|
C:BCL101
|
3.0
|
54.5
|
1.0
|
C1B
|
C:BCL101
|
3.1
|
52.3
|
1.0
|
C4B
|
C:BCL101
|
3.1
|
53.2
|
1.0
|
C1C
|
C:BCL101
|
3.1
|
53.4
|
1.0
|
C1D
|
C:BCL101
|
3.1
|
54.1
|
1.0
|
C4A
|
C:BCL101
|
3.1
|
54.9
|
1.0
|
C4C
|
C:BCL101
|
3.2
|
54.5
|
1.0
|
CN
|
C:CXM1
|
3.2
|
52.7
|
1.0
|
C1A
|
C:BCL101
|
3.2
|
55.9
|
1.0
|
CHB
|
C:BCL101
|
3.4
|
53.6
|
1.0
|
CHC
|
C:BCL101
|
3.4
|
53.9
|
1.0
|
CHA
|
C:BCL101
|
3.5
|
56.0
|
1.0
|
CHD
|
C:BCL101
|
3.5
|
54.3
|
1.0
|
N
|
C:CXM1
|
3.8
|
51.6
|
1.0
|
C15
|
D:BCL101
|
4.2
|
34.1
|
1.0
|
C3D
|
C:BCL101
|
4.2
|
53.6
|
1.0
|
ON2
|
C:CXM1
|
4.2
|
54.4
|
1.0
|
C12
|
D:BCL101
|
4.2
|
37.3
|
1.0
|
C2B
|
C:BCL101
|
4.3
|
51.3
|
1.0
|
C2D
|
C:BCL101
|
4.3
|
53.6
|
1.0
|
C3B
|
C:BCL101
|
4.3
|
52.9
|
1.0
|
C2C
|
C:BCL101
|
4.4
|
52.9
|
1.0
|
C3C
|
C:BCL101
|
4.4
|
55.5
|
1.0
|
C3A
|
C:BCL101
|
4.4
|
54.5
|
1.0
|
C2A
|
C:BCL101
|
4.5
|
55.5
|
1.0
|
C14
|
D:BCL101
|
4.6
|
35.0
|
1.0
|
C13
|
D:BCL101
|
4.6
|
35.0
|
1.0
|
CD1
|
D:ILE26
|
4.9
|
32.3
|
1.0
|
CBD
|
C:BCL101
|
4.9
|
54.3
|
1.0
|
|
Reference:
P.Qian,
C.T.Nguyen-Phan,
A.T.Gardiner,
T.I.Croll,
A.W.Roszak,
J.Southall,
P.J.Jackson,
C.Vasilev,
P.Castro-Hartmann,
K.Sader,
C.N.Hunter,
R.J.Cogdell.
Cryo-Em Structures of Light-Harvesting 2 Complexes From Rhodopseudomonas Palustris Reveal the Molecular Origin of Absorption Tuning. Proc.Natl.Acad.Sci.Usa V. 119 09119 2022.
ISSN: ESSN 1091-6490
PubMed: 36251992
DOI: 10.1073/PNAS.2210109119
Page generated: Thu Oct 3 16:43:33 2024
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