Magnesium in PDB 7zdk: If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8) (pdb code 7zdk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8), PDB code: 7zdk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7zdk

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Magnesium binding site 1 out of 2 in the If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:21.1
occ:1.00
O1B C:ANP602 2.2 25.9 1.0
OG C:SER380 2.2 22.4 1.0
O2G C:ANP602 2.2 25.9 1.0
OE1 C:GLN421 2.3 20.6 1.0
CB C:SER380 2.9 22.4 1.0
PG C:ANP602 3.1 25.9 1.0
PB C:ANP602 3.3 25.9 1.0
O3G C:ANP602 3.3 25.9 1.0
CD C:GLN421 3.4 20.6 1.0
N3B C:ANP602 3.4 25.9 1.0
OD1 C:ASP499 3.8 25.2 1.0
OD2 C:ASP499 4.0 25.2 1.0
CA C:SER380 4.0 22.4 1.0
NE2 C:GLN421 4.0 20.6 1.0
OE1 C:GLU500 4.1 31.2 1.0
N C:SER380 4.2 22.4 1.0
O2A C:ANP602 4.2 25.9 1.0
O2B C:ANP602 4.2 25.9 1.0
CG C:ASP499 4.3 25.2 1.0
O3A C:ANP602 4.4 25.9 1.0
O1G C:ANP602 4.5 25.9 1.0
CD C:GLU500 4.6 31.2 1.0
CG C:GLN421 4.6 20.6 1.0
PA C:ANP602 4.8 25.9 1.0
CB C:GLN421 4.9 20.6 1.0

Magnesium binding site 2 out of 2 in 7zdk

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Magnesium binding site 2 out of 2 in the If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:28.1
occ:1.00
O1G D:ANP602 2.2 33.7 1.0
OG D:SER390 2.2 21.8 1.0
OE1 D:GLN430 2.2 26.0 1.0
O1B D:ANP602 2.3 33.7 1.0
CD D:GLN430 3.2 26.0 1.0
CB D:SER390 3.3 21.8 1.0
PG D:ANP602 3.5 33.7 1.0
PB D:ANP602 3.5 33.7 1.0
NE2 D:GLN430 3.6 26.0 1.0
N3B D:ANP602 3.7 33.7 1.0
OD2 D:ASP510 4.0 21.4 1.0
O3G D:ANP602 4.2 33.7 1.0
CA D:SER390 4.3 21.8 1.0
OD1 D:ASP510 4.4 21.4 1.0
N D:SER390 4.4 21.8 1.0
CG D:GLN430 4.4 26.0 1.0
O2B D:ANP602 4.5 33.7 1.0
O3A D:ANP602 4.5 33.7 1.0
O2G D:ANP602 4.6 33.7 1.0
CG D:ASP510 4.6 21.4 1.0
O2A D:ANP602 4.6 33.7 1.0

Reference:

D.Wu, S.Safarian. If(Apo/Asym) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8) To Be Published.
Page generated: Tue Apr 25 23:19:14 2023

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