Magnesium in PDB 7zki: Cryo-Em Structure of AIF1A:AIF5B:Met-Trnaimet Complex From A Pyrococcus Abyssi 30S Initiation Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of AIF1A:AIF5B:Met-Trnaimet Complex From A Pyrococcus Abyssi 30S Initiation Complex (pdb code 7zki). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of AIF1A:AIF5B:Met-Trnaimet Complex From A Pyrococcus Abyssi 30S Initiation Complex, PDB code: 7zki:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of AIF1A:AIF5B:Met-Trnaimet Complex From A Pyrococcus Abyssi 30S Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of AIF1A:AIF5B:Met-Trnaimet Complex From A Pyrococcus Abyssi 30S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ 7:Mg602 b:38.4 occ:1.00 O1G 7:GNP601 2.1 47.6 1.0 OG1 7:THR21 2.1 39.2 1.0 OG1 7:THR41 2.2 26.6 1.0 O2B 7:GNP601 2.8 47.6 1.0 CG2 7:THR41 3.2 26.6 1.0 CB 7:THR41 3.3 26.6 1.0 PG 7:GNP601 3.3 47.6 1.0 CB 7:THR21 3.4 39.2 1.0 O2G 7:GNP601 3.9 47.6 1.0 N 7:THR21 3.9 39.2 1.0 OD1 7:ASP78 4.0 22.7 1.0 N3B 7:GNP601 4.0 47.6 1.0 PB 7:GNP601 4.1 47.6 1.0 N 7:THR41 4.2 26.6 1.0 CA 7:THR21 4.2 39.2 1.0 OD2 7:ASP78 4.2 22.7 1.0 CA 7:THR41 4.3 26.6 1.0 CG2 7:THR21 4.5 39.2 1.0 CG 7:ASP78 4.5 22.7 1.0 CB 7:LYS20 4.6 39.6 1.0 O 7:THR79 4.6 18.8 1.0 O 7:THR41 4.6 26.6 1.0 O2A 7:GNP601 4.6 47.6 1.0 O3G 7:GNP601 4.7 47.6 1.0 CE 7:LYS20 4.8 39.6 1.0 C 7:LYS20 4.9 39.6 1.0 C 7:THR41 5.0 26.6 1.0 O1B 7:GNP601 5.0 47.6 1.0

R.Kazan, G.Bourgeois, C.Lazennec-Schurdevin, E.Larquet, Y.Mechulam, P.D.Coureux, E.Schmitt. Role of AIF5B in Archaeal Translation Initiation. Nucleic Acids Res. V. 50 6532 2022.
ISSN: ESSN 1362-4962
PubMed: 35694843
DOI: 10.1093/NAR/GKAC490