Magnesium in PDB 7znj: Structure of An Alyref-Exon Junction Complex Hexamer

The binding sites of Magnesium atom in the Structure of An Alyref-Exon Junction Complex Hexamer (pdb code 7znj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of An Alyref-Exon Junction Complex Hexamer, PDB code: 7znj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Structure of An Alyref-Exon Junction Complex Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of An Alyref-Exon Junction Complex Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:8.8 occ:1.00 O3G A:ANP502 2.1 0.0 1.0 O2B A:ANP502 2.2 0.0 1.0 OG1 A:THR89 2.4 13.7 1.0 PG A:ANP502 3.4 0.0 1.0 PB A:ANP502 3.4 0.0 1.0 CB A:THR89 3.7 3.3 1.0 N3B A:ANP502 3.7 2.9 1.0 OD1 A:ASP187 3.8 23.9 1.0 N A:THR89 3.8 8.6 1.0 OD2 A:ASP187 3.9 9.9 1.0 O1B A:ANP502 4.0 0.0 1.0 O1G A:ANP502 4.1 4.7 1.0 CE A:LYS88 4.2 0.0 1.0 CA A:THR89 4.2 0.4 1.0 OE2 A:GLU188 4.2 13.8 1.0 CB A:LYS88 4.2 1.4 1.0 CG A:ASP187 4.3 11.5 1.0 C A:LYS88 4.5 0.0 1.0 NZ A:LYS88 4.6 0.0 1.0 O2G A:ANP502 4.6 0.0 1.0 O2A A:ANP502 4.6 11.4 1.0 O3A A:ANP502 4.7 9.4 1.0 CG2 A:THR89 4.7 0.4 1.0 CA A:GLY340 4.7 0.0 1.0 CA A:LYS88 4.9 0.0 1.0

Magnesium binding site 2 out of 6 in the Structure of An Alyref-Exon Junction Complex Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of An Alyref-Exon Junction Complex Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg501 b:4.1 occ:1.00 O2B a:ANP502 2.1 0.6 1.0 O3G a:ANP502 2.2 0.0 1.0 OG1 a:THR89 2.3 13.9 1.0 PB a:ANP502 3.4 0.0 1.0 PG a:ANP502 3.5 0.0 1.0 CB a:THR89 3.6 1.3 1.0 N a:THR89 3.7 7.4 1.0 OD1 a:ASP187 3.7 25.1 1.0 N3B a:ANP502 3.8 2.6 1.0 OD2 a:ASP187 3.9 10.3 1.0 O1B a:ANP502 4.1 0.0 1.0 CA a:THR89 4.1 0.8 1.0 O1G a:ANP502 4.2 0.0 1.0 CE a:LYS88 4.2 1.2 1.0 CG a:ASP187 4.2 8.9 1.0 CB a:LYS88 4.2 0.0 1.0 C a:LYS88 4.4 0.0 1.0 OE2 a:GLU188 4.5 9.5 1.0 NZ a:LYS88 4.6 0.0 1.0 CG2 a:THR89 4.6 0.0 1.0 O3A a:ANP502 4.6 8.5 1.0 O2A a:ANP502 4.6 13.0 1.0 O2G a:ANP502 4.7 0.0 1.0 CA a:LYS88 4.8 0.0 1.0 CA a:GLY340 4.9 0.0 1.0

Magnesium binding site 3 out of 6 in the Structure of An Alyref-Exon Junction Complex Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of An Alyref-Exon Junction Complex Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg501 b:7.5 occ:1.00 O2B F:ANP502 2.1 0.0 1.0 O3G F:ANP502 2.2 0.0 1.0 OG1 F:THR89 2.3 14.8 1.0 PB F:ANP502 3.4 0.0 1.0 PG F:ANP502 3.5 0.0 1.0 CB F:THR89 3.6 0.3 1.0 OD1 F:ASP187 3.7 22.6 1.0 N F:THR89 3.7 9.8 1.0 N3B F:ANP502 3.8 3.5 1.0 OD2 F:ASP187 3.9 14.1 1.0 CA F:THR89 4.0 0.6 1.0 O1B F:ANP502 4.1 0.0 1.0 CE F:LYS88 4.2 1.7 1.0 O1G F:ANP502 4.2 0.0 1.0 CB F:LYS88 4.2 0.0 1.0 CG F:ASP187 4.2 7.8 1.0 C F:LYS88 4.4 0.0 1.0 CG2 F:THR89 4.6 0.0 1.0 NZ F:LYS88 4.6 0.8 1.0 O3A F:ANP502 4.6 9.9 1.0 O2A F:ANP502 4.6 14.5 1.0 O2G F:ANP502 4.7 0.0 1.0 OE2 F:GLU188 4.7 11.7 1.0 CA F:LYS88 4.8 0.0 1.0 CA F:GLY340 4.9 0.0 1.0 CD F:GLU188 5.0 10.9 1.0

Magnesium binding site 4 out of 6 in the Structure of An Alyref-Exon Junction Complex Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of An Alyref-Exon Junction Complex Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ f:Mg501 b:6.7 occ:1.00 O3G f:ANP502 2.1 0.6 1.0 O2B f:ANP502 2.2 0.0 1.0 OG1 f:THR89 2.4 16.0 1.0 PG f:ANP502 3.4 0.0 1.0 PB f:ANP502 3.4 0.0 1.0 OD1 f:ASP187 3.7 22.8 1.0 CB f:THR89 3.7 3.0 1.0 N3B f:ANP502 3.7 1.1 1.0 N f:THR89 3.8 7.3 1.0 OD2 f:ASP187 3.9 9.0 1.0 O1B f:ANP502 4.0 0.0 1.0 O1G f:ANP502 4.1 6.4 1.0 CA f:THR89 4.2 0.1 1.0 CE f:LYS88 4.2 1.0 1.0 CB f:LYS88 4.2 1.1 1.0 CG f:ASP187 4.3 9.5 1.0 OE2 f:GLU188 4.4 14.0 1.0 C f:LYS88 4.5 0.4 1.0 NZ f:LYS88 4.6 0.0 1.0 O2G f:ANP502 4.6 0.0 1.0 O3A f:ANP502 4.6 8.2 1.0 O2A f:ANP502 4.6 8.9 1.0 CG2 f:THR89 4.7 0.0 1.0 CA f:GLY340 4.8 0.0 1.0 CA f:LYS88 4.8 0.0 1.0

Magnesium binding site 5 out of 6 in the Structure of An Alyref-Exon Junction Complex Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of An Alyref-Exon Junction Complex Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg501 b:1.3 occ:1.00 O2B K:ANP502 2.1 7.8 1.0 O3G K:ANP502 2.2 7.5 1.0 OG1 K:THR89 2.3 16.6 1.0 PB K:ANP502 3.4 0.0 1.0 PG K:ANP502 3.5 0.0 1.0 OD1 K:ASP187 3.5 19.4 1.0 CB K:THR89 3.6 6.5 1.0 N K:THR89 3.7 1.8 1.0 N3B K:ANP502 3.8 7.5 1.0 OD2 K:ASP187 3.8 13.9 1.0 O1B K:ANP502 4.0 0.0 1.0 CA K:THR89 4.1 3.3 1.0 CG K:ASP187 4.1 11.4 1.0 CB K:LYS88 4.2 6.4 1.0 O1G K:ANP502 4.2 7.3 1.0 CE K:LYS88 4.2 0.0 1.0 C K:LYS88 4.4 2.1 1.0 CG2 K:THR89 4.6 3.5 1.0 O2A K:ANP502 4.6 22.2 1.0 NZ K:LYS88 4.6 0.0 1.0 O3A K:ANP502 4.6 11.9 1.0 O2G K:ANP502 4.7 0.0 1.0 OE2 K:GLU188 4.7 12.7 1.0 CA K:LYS88 4.8 0.0 1.0 CD K:GLU188 4.9 11.5 1.0 CA K:GLY340 4.9 0.0 1.0 PA K:ANP502 5.0 0.0 1.0

Magnesium binding site 6 out of 6 in the Structure of An Alyref-Exon Junction Complex Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of An Alyref-Exon Junction Complex Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ k:Mg501 b:5.9 occ:1.00 O3G k:ANP502 2.1 9.6 1.0 O2B k:ANP502 2.1 6.0 1.0 OG1 k:THR89 2.3 19.2 1.0 PB k:ANP502 3.4 0.0 1.0 PG k:ANP502 3.4 0.0 1.0 OD1 k:ASP187 3.6 19.1 1.0 CB k:THR89 3.6 6.0 1.0 N k:THR89 3.7 0.7 1.0 N3B k:ANP502 3.8 7.4 1.0 OD2 k:ASP187 3.9 11.5 1.0 O1B k:ANP502 4.0 0.0 1.0 CA k:THR89 4.1 2.2 1.0 O1G k:ANP502 4.1 6.9 1.0 CG k:ASP187 4.2 9.7 1.0 CB k:LYS88 4.2 4.7 1.0 CE k:LYS88 4.2 0.0 1.0 C k:LYS88 4.4 2.5 1.0 O2A k:ANP502 4.6 21.3 1.0 O2G k:ANP502 4.6 0.0 1.0 CG2 k:THR89 4.6 3.7 1.0 NZ k:LYS88 4.6 0.0 1.0 O3A k:ANP502 4.6 11.7 1.0 OE2 k:GLU188 4.7 13.3 1.0 CA k:LYS88 4.8 0.0 1.0 CA k:GLY340 4.9 0.0 1.0 CD k:GLU188 4.9 11.4 1.0 PA k:ANP502 5.0 0.0 1.0

B.Pacheco-Fiallos, M.K.Vorlander, D.Riabov-Bassat, L.Fin, F.J.O'reilly, F.I.Ayala, U.Schellhaas, J.Rappsilber, C.Plaschka. Mrna Recognition and Packaging By the Human Transcription-Export Complex Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-05904-0