Magnesium in PDB 7zp9: Ktrab Complex
Other elements in 7zp9:
The structure of Ktrab Complex also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Ktrab Complex
(pdb code 7zp9). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Ktrab Complex, PDB code: 7zp9:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 1 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg1001
b:36.6
occ:1.00
|
O3B
|
H:ADP1002
|
2.0
|
36.9
|
1.0
|
NZ
|
H:LYS102
|
3.1
|
32.9
|
1.0
|
N
|
H:PHE16
|
3.2
|
32.9
|
1.0
|
O
|
H:HOH1101
|
3.2
|
31.4
|
1.0
|
N
|
H:ARG15
|
3.4
|
35.8
|
1.0
|
OE2
|
F:GLU124
|
3.4
|
40.0
|
1.0
|
PB
|
H:ADP1002
|
3.5
|
36.9
|
1.0
|
CD
|
F:GLU124
|
3.6
|
40.0
|
1.0
|
CB
|
H:PHE16
|
3.7
|
32.9
|
1.0
|
O2A
|
H:ADP1002
|
3.8
|
36.9
|
1.0
|
OE1
|
F:GLU124
|
3.9
|
40.0
|
1.0
|
C
|
H:GLY14
|
4.0
|
32.8
|
1.0
|
CA
|
H:GLY14
|
4.1
|
32.8
|
1.0
|
CA
|
H:ARG15
|
4.1
|
35.8
|
1.0
|
CA
|
H:PHE16
|
4.1
|
32.9
|
1.0
|
C
|
H:ARG15
|
4.1
|
35.8
|
1.0
|
CB
|
H:ARG15
|
4.1
|
35.8
|
1.0
|
O2B
|
H:ADP1002
|
4.2
|
36.9
|
1.0
|
NH2
|
H:ARG15
|
4.2
|
35.8
|
1.0
|
O1B
|
H:ADP1002
|
4.3
|
36.9
|
1.0
|
CG
|
F:GLU124
|
4.3
|
40.0
|
1.0
|
NE
|
H:ARG15
|
4.4
|
35.8
|
1.0
|
CE
|
H:LYS102
|
4.4
|
32.9
|
1.0
|
O3A
|
H:ADP1002
|
4.4
|
36.9
|
1.0
|
CZ
|
H:ARG15
|
4.6
|
35.8
|
1.0
|
CB
|
F:GLU124
|
4.6
|
40.0
|
1.0
|
C5'
|
H:ADP1002
|
4.7
|
36.9
|
1.0
|
PA
|
H:ADP1002
|
4.7
|
36.9
|
1.0
|
CD
|
H:LYS102
|
4.8
|
32.9
|
1.0
|
O
|
H:ALA76
|
4.8
|
27.9
|
1.0
|
N
|
H:GLY17
|
4.9
|
30.4
|
1.0
|
N
|
H:GLY14
|
4.9
|
32.8
|
1.0
|
O
|
H:GLY14
|
4.9
|
32.8
|
1.0
|
CG
|
H:ARG15
|
5.0
|
35.8
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 2 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1002
b:35.8
occ:1.00
|
O3B
|
D:ADP1001
|
2.0
|
37.0
|
1.0
|
O
|
D:HOH1101
|
3.2
|
33.1
|
1.0
|
N
|
D:PHE16
|
3.4
|
31.8
|
1.0
|
OE1
|
E:GLU124
|
3.5
|
39.9
|
1.0
|
PB
|
D:ADP1001
|
3.5
|
37.0
|
1.0
|
N
|
D:ARG15
|
3.6
|
36.6
|
1.0
|
CE
|
D:LYS102
|
3.7
|
31.4
|
1.0
|
NZ
|
D:LYS102
|
3.7
|
31.4
|
1.0
|
CD
|
E:GLU124
|
3.7
|
39.9
|
1.0
|
CB
|
D:PHE16
|
3.7
|
31.8
|
1.0
|
O1A
|
D:ADP1001
|
3.8
|
37.0
|
1.0
|
OE2
|
E:GLU124
|
3.9
|
39.9
|
1.0
|
CA
|
D:GLY14
|
4.1
|
33.8
|
1.0
|
O1B
|
D:ADP1001
|
4.1
|
37.0
|
1.0
|
C
|
D:GLY14
|
4.1
|
33.8
|
1.0
|
CA
|
D:PHE16
|
4.2
|
31.8
|
1.0
|
O3A
|
D:ADP1001
|
4.2
|
37.0
|
1.0
|
CA
|
D:ARG15
|
4.4
|
36.6
|
1.0
|
C
|
D:ARG15
|
4.4
|
36.6
|
1.0
|
NH2
|
D:ARG15
|
4.4
|
36.6
|
1.0
|
O2B
|
D:ADP1001
|
4.5
|
37.0
|
1.0
|
CG
|
E:GLU124
|
4.5
|
39.9
|
1.0
|
CB
|
E:GLU124
|
4.5
|
39.9
|
1.0
|
CB
|
D:ARG15
|
4.5
|
36.6
|
1.0
|
PA
|
D:ADP1001
|
4.6
|
37.0
|
1.0
|
CD
|
D:LYS102
|
4.6
|
31.4
|
1.0
|
C5'
|
D:ADP1001
|
4.7
|
37.0
|
1.0
|
NE
|
D:ARG15
|
4.7
|
36.6
|
1.0
|
O
|
D:ALA76
|
4.7
|
28.4
|
1.0
|
CZ
|
D:ARG15
|
4.7
|
36.6
|
1.0
|
N
|
D:GLY17
|
4.9
|
31.3
|
1.0
|
N
|
D:GLY14
|
4.9
|
33.8
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 3 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg302
b:44.7
occ:1.00
|
O3B
|
E:ADP301
|
2.0
|
43.1
|
1.0
|
O3A
|
E:ADP301
|
2.1
|
43.1
|
1.0
|
PB
|
E:ADP301
|
2.4
|
43.1
|
1.0
|
O2B
|
E:ADP301
|
2.9
|
43.1
|
1.0
|
N
|
E:ARG15
|
3.4
|
40.4
|
1.0
|
PA
|
E:ADP301
|
3.5
|
43.1
|
1.0
|
NE
|
E:ARG15
|
3.6
|
40.4
|
1.0
|
CA
|
E:GLY14
|
3.8
|
39.1
|
1.0
|
O2A
|
E:ADP301
|
3.8
|
43.1
|
1.0
|
O1B
|
E:ADP301
|
3.8
|
43.1
|
1.0
|
CG
|
E:ARG15
|
4.1
|
40.4
|
1.0
|
C
|
E:GLY14
|
4.1
|
39.1
|
1.0
|
NH2
|
E:ARG15
|
4.2
|
40.4
|
1.0
|
CB
|
E:ARG15
|
4.3
|
40.4
|
1.0
|
CZ
|
E:ARG15
|
4.3
|
40.4
|
1.0
|
O1A
|
E:ADP301
|
4.4
|
43.1
|
1.0
|
CD
|
E:ARG15
|
4.5
|
40.4
|
1.0
|
CA
|
E:ARG15
|
4.5
|
40.4
|
1.0
|
O5'
|
E:ADP301
|
4.5
|
43.1
|
1.0
|
NH1
|
E:ARG40
|
4.8
|
45.9
|
1.0
|
C5'
|
E:ADP301
|
4.8
|
43.1
|
1.0
|
O
|
E:HOH401
|
4.8
|
39.7
|
1.0
|
NH2
|
E:ARG40
|
4.9
|
45.9
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 4 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg302
b:41.8
occ:1.00
|
O3A
|
F:ADP301
|
2.0
|
43.8
|
1.0
|
O3B
|
F:ADP301
|
2.0
|
43.8
|
1.0
|
PB
|
F:ADP301
|
2.4
|
43.8
|
1.0
|
O1B
|
F:ADP301
|
3.0
|
43.8
|
1.0
|
PA
|
F:ADP301
|
3.3
|
43.8
|
1.0
|
NE
|
F:ARG15
|
3.4
|
41.3
|
1.0
|
O1A
|
F:ADP301
|
3.6
|
43.8
|
1.0
|
N
|
F:ARG15
|
3.6
|
41.3
|
1.0
|
O2B
|
F:ADP301
|
3.8
|
43.8
|
1.0
|
NH2
|
F:ARG15
|
3.9
|
41.3
|
1.0
|
CA
|
F:GLY14
|
3.9
|
38.3
|
1.0
|
O5'
|
F:ADP301
|
4.0
|
43.8
|
1.0
|
CZ
|
F:ARG15
|
4.1
|
41.3
|
1.0
|
CG
|
F:ARG15
|
4.1
|
41.3
|
1.0
|
NH1
|
F:ARG40
|
4.2
|
45.5
|
1.0
|
C
|
F:GLY14
|
4.3
|
38.3
|
1.0
|
CD
|
F:ARG15
|
4.3
|
41.3
|
1.0
|
NH2
|
F:ARG40
|
4.4
|
45.5
|
1.0
|
CB
|
F:ARG15
|
4.4
|
41.3
|
1.0
|
O2A
|
F:ADP301
|
4.5
|
43.8
|
1.0
|
CA
|
F:ARG15
|
4.6
|
41.3
|
1.0
|
CZ
|
F:ARG40
|
4.7
|
45.5
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 5 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1001
b:38.6
occ:1.00
|
O3B
|
A:ADP1002
|
1.9
|
38.6
|
1.0
|
O
|
A:HOH1101
|
3.3
|
32.9
|
1.0
|
N
|
A:PHE16
|
3.4
|
33.4
|
1.0
|
PB
|
A:ADP1002
|
3.4
|
38.6
|
1.0
|
N
|
A:ARG15
|
3.4
|
37.4
|
1.0
|
CD
|
L:GLU124
|
3.7
|
39.7
|
1.0
|
OE1
|
L:GLU124
|
3.7
|
39.7
|
1.0
|
OE2
|
L:GLU124
|
3.8
|
39.7
|
1.0
|
CE
|
A:LYS102
|
3.9
|
32.6
|
1.0
|
CB
|
A:PHE16
|
3.9
|
33.4
|
1.0
|
O2A
|
A:ADP1002
|
3.9
|
38.6
|
1.0
|
O5'
|
A:ADP1002
|
4.0
|
38.6
|
1.0
|
C
|
A:GLY14
|
4.1
|
33.8
|
1.0
|
NZ
|
A:LYS102
|
4.1
|
32.6
|
1.0
|
NE
|
A:ARG15
|
4.1
|
37.4
|
1.0
|
CA
|
A:ARG15
|
4.2
|
37.4
|
1.0
|
CB
|
A:ARG15
|
4.2
|
37.4
|
1.0
|
CA
|
A:GLY14
|
4.2
|
33.8
|
1.0
|
O2B
|
A:ADP1002
|
4.2
|
38.6
|
1.0
|
NH2
|
A:ARG15
|
4.2
|
37.4
|
1.0
|
O1B
|
A:ADP1002
|
4.2
|
38.6
|
1.0
|
O3A
|
A:ADP1002
|
4.2
|
38.6
|
1.0
|
C
|
A:ARG15
|
4.3
|
37.4
|
1.0
|
CA
|
A:PHE16
|
4.3
|
33.4
|
1.0
|
CG
|
L:GLU124
|
4.3
|
39.7
|
1.0
|
PA
|
A:ADP1002
|
4.4
|
38.6
|
1.0
|
CB
|
L:GLU124
|
4.5
|
39.7
|
1.0
|
CZ
|
A:ARG15
|
4.6
|
37.4
|
1.0
|
O
|
A:ALA76
|
4.8
|
28.4
|
1.0
|
CD
|
A:LYS102
|
4.8
|
32.6
|
1.0
|
CG
|
A:ARG15
|
4.9
|
37.4
|
1.0
|
N
|
A:GLY17
|
4.9
|
31.7
|
1.0
|
N
|
A:GLY14
|
4.9
|
33.8
|
1.0
|
O
|
A:GLY14
|
5.0
|
33.8
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 6 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1002
b:37.8
occ:1.00
|
O3B
|
B:ADP1001
|
2.0
|
37.3
|
1.0
|
O1A
|
B:ADP1001
|
2.9
|
37.3
|
1.0
|
PB
|
B:ADP1001
|
3.3
|
37.3
|
1.0
|
O
|
B:HOH1102
|
3.3
|
34.1
|
1.0
|
O1B
|
B:ADP1001
|
3.6
|
37.3
|
1.0
|
N
|
B:ARG15
|
3.7
|
37.3
|
1.0
|
OE1
|
J:GLU124
|
3.8
|
40.4
|
1.0
|
CE
|
B:LYS102
|
3.8
|
31.4
|
1.0
|
NZ
|
B:LYS102
|
3.9
|
31.4
|
1.0
|
PA
|
B:ADP1001
|
4.0
|
37.3
|
1.0
|
N
|
B:PHE16
|
4.0
|
32.7
|
1.0
|
CD
|
J:GLU124
|
4.0
|
40.4
|
1.0
|
O3A
|
B:ADP1001
|
4.1
|
37.3
|
1.0
|
CA
|
B:GLY14
|
4.1
|
34.6
|
1.0
|
NH2
|
B:ARG15
|
4.2
|
37.3
|
1.0
|
OE2
|
J:GLU124
|
4.2
|
40.4
|
1.0
|
C
|
B:GLY14
|
4.3
|
34.6
|
1.0
|
NE
|
B:ARG15
|
4.3
|
37.3
|
1.0
|
CB
|
B:PHE16
|
4.4
|
32.7
|
1.0
|
O5'
|
B:ADP1001
|
4.4
|
37.3
|
1.0
|
O2B
|
B:ADP1001
|
4.4
|
37.3
|
1.0
|
C5'
|
B:ADP1001
|
4.4
|
37.3
|
1.0
|
O
|
B:ALA76
|
4.6
|
28.7
|
1.0
|
CA
|
B:ARG15
|
4.6
|
37.3
|
1.0
|
CB
|
B:ARG15
|
4.6
|
37.3
|
1.0
|
CG
|
J:GLU124
|
4.7
|
40.4
|
1.0
|
CZ
|
B:ARG15
|
4.7
|
37.3
|
1.0
|
CA
|
B:GLY78
|
4.8
|
37.5
|
1.0
|
C
|
B:ARG15
|
4.8
|
37.3
|
1.0
|
CA
|
B:PHE16
|
4.8
|
32.7
|
1.0
|
CD
|
B:LYS102
|
4.9
|
31.4
|
1.0
|
N
|
B:GLY78
|
4.9
|
37.5
|
1.0
|
N
|
B:GLY14
|
4.9
|
34.6
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 7 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg302
b:30.0
occ:1.00
|
O2B
|
J:ADP301
|
2.1
|
44.6
|
1.0
|
PB
|
J:ADP301
|
3.1
|
44.6
|
1.0
|
O1B
|
J:ADP301
|
3.1
|
44.6
|
1.0
|
O
|
J:HOH407
|
3.3
|
45.9
|
1.0
|
N
|
J:ARG15
|
3.5
|
42.9
|
1.0
|
O2A
|
J:ADP301
|
3.5
|
44.6
|
1.0
|
NE
|
J:ARG15
|
3.6
|
42.9
|
1.0
|
CA
|
J:GLY14
|
3.9
|
39.5
|
1.0
|
CG
|
J:ARG15
|
3.9
|
42.9
|
1.0
|
O3A
|
J:ADP301
|
4.0
|
44.6
|
1.0
|
NH1
|
J:ARG40
|
4.0
|
45.5
|
1.0
|
O5'
|
J:ADP301
|
4.1
|
44.6
|
1.0
|
PA
|
J:ADP301
|
4.2
|
44.6
|
1.0
|
C
|
J:GLY14
|
4.2
|
39.5
|
1.0
|
CB
|
J:ARG15
|
4.3
|
42.9
|
1.0
|
O3B
|
J:ADP301
|
4.3
|
44.6
|
1.0
|
CD
|
J:ARG15
|
4.3
|
42.9
|
1.0
|
NH2
|
J:ARG40
|
4.4
|
45.5
|
1.0
|
NH2
|
J:ARG15
|
4.5
|
42.9
|
1.0
|
CZ
|
J:ARG15
|
4.5
|
42.9
|
1.0
|
CA
|
J:ARG15
|
4.5
|
42.9
|
1.0
|
O
|
J:HOH405
|
4.5
|
49.5
|
1.0
|
CZ
|
J:ARG40
|
4.6
|
45.5
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 7zp9
Go back to
Magnesium Binding Sites List in 7zp9
Magnesium binding site 8 out
of 8 in the Ktrab Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Ktrab Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg302
b:44.6
occ:1.00
|
O2B
|
L:ADP301
|
2.0
|
44.9
|
1.0
|
O2A
|
L:ADP301
|
2.0
|
44.9
|
1.0
|
PB
|
L:ADP301
|
3.1
|
44.9
|
1.0
|
PA
|
L:ADP301
|
3.2
|
44.9
|
1.0
|
O3A
|
L:ADP301
|
3.3
|
44.9
|
1.0
|
N
|
L:ARG15
|
3.4
|
40.8
|
1.0
|
NE
|
L:ARG15
|
3.5
|
40.8
|
1.0
|
O1B
|
L:ADP301
|
3.8
|
44.9
|
1.0
|
CG
|
L:ARG15
|
3.8
|
40.8
|
1.0
|
CA
|
L:GLY14
|
3.8
|
38.3
|
1.0
|
O5'
|
L:ADP301
|
3.9
|
44.9
|
1.0
|
C
|
L:GLY14
|
4.1
|
38.3
|
1.0
|
CB
|
L:ARG15
|
4.2
|
40.8
|
1.0
|
CD
|
L:ARG15
|
4.2
|
40.8
|
1.0
|
NH2
|
L:ARG15
|
4.4
|
40.8
|
1.0
|
CZ
|
L:ARG15
|
4.4
|
40.8
|
1.0
|
O3B
|
L:ADP301
|
4.4
|
44.9
|
1.0
|
CA
|
L:ARG15
|
4.4
|
40.8
|
1.0
|
O1A
|
L:ADP301
|
4.5
|
44.9
|
1.0
|
NH1
|
L:ARG40
|
4.6
|
46.3
|
1.0
|
NH2
|
L:ARG40
|
4.7
|
46.3
|
1.0
|
CZ
|
L:ARG40
|
4.9
|
46.3
|
1.0
|
|
Reference:
J.Stautz,
J.Vonck,
J.Stautz.
N/A N/A.
Page generated: Thu Oct 3 17:03:27 2024
|