Magnesium in PDB 7zp9: Ktrab Complex

The structure of Ktrab Complex also contains other interesting chemical elements:

Potassium

(K)

4 atoms

The binding sites of Magnesium atom in the Ktrab Complex (pdb code 7zp9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Ktrab Complex, PDB code: 7zp9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1001 b:36.6 occ:1.00 O3B H:ADP1002 2.0 36.9 1.0 NZ H:LYS102 3.1 32.9 1.0 N H:PHE16 3.2 32.9 1.0 O H:HOH1101 3.2 31.4 1.0 N H:ARG15 3.4 35.8 1.0 OE2 F:GLU124 3.4 40.0 1.0 PB H:ADP1002 3.5 36.9 1.0 CD F:GLU124 3.6 40.0 1.0 CB H:PHE16 3.7 32.9 1.0 O2A H:ADP1002 3.8 36.9 1.0 OE1 F:GLU124 3.9 40.0 1.0 C H:GLY14 4.0 32.8 1.0 CA H:GLY14 4.1 32.8 1.0 CA H:ARG15 4.1 35.8 1.0 CA H:PHE16 4.1 32.9 1.0 C H:ARG15 4.1 35.8 1.0 CB H:ARG15 4.1 35.8 1.0 O2B H:ADP1002 4.2 36.9 1.0 NH2 H:ARG15 4.2 35.8 1.0 O1B H:ADP1002 4.3 36.9 1.0 CG F:GLU124 4.3 40.0 1.0 NE H:ARG15 4.4 35.8 1.0 CE H:LYS102 4.4 32.9 1.0 O3A H:ADP1002 4.4 36.9 1.0 CZ H:ARG15 4.6 35.8 1.0 CB F:GLU124 4.6 40.0 1.0 C5' H:ADP1002 4.7 36.9 1.0 PA H:ADP1002 4.7 36.9 1.0 CD H:LYS102 4.8 32.9 1.0 O H:ALA76 4.8 27.9 1.0 N H:GLY17 4.9 30.4 1.0 N H:GLY14 4.9 32.8 1.0 O H:GLY14 4.9 32.8 1.0 CG H:ARG15 5.0 35.8 1.0

Magnesium binding site 2 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:35.8 occ:1.00 O3B D:ADP1001 2.0 37.0 1.0 O D:HOH1101 3.2 33.1 1.0 N D:PHE16 3.4 31.8 1.0 OE1 E:GLU124 3.5 39.9 1.0 PB D:ADP1001 3.5 37.0 1.0 N D:ARG15 3.6 36.6 1.0 CE D:LYS102 3.7 31.4 1.0 NZ D:LYS102 3.7 31.4 1.0 CD E:GLU124 3.7 39.9 1.0 CB D:PHE16 3.7 31.8 1.0 O1A D:ADP1001 3.8 37.0 1.0 OE2 E:GLU124 3.9 39.9 1.0 CA D:GLY14 4.1 33.8 1.0 O1B D:ADP1001 4.1 37.0 1.0 C D:GLY14 4.1 33.8 1.0 CA D:PHE16 4.2 31.8 1.0 O3A D:ADP1001 4.2 37.0 1.0 CA D:ARG15 4.4 36.6 1.0 C D:ARG15 4.4 36.6 1.0 NH2 D:ARG15 4.4 36.6 1.0 O2B D:ADP1001 4.5 37.0 1.0 CG E:GLU124 4.5 39.9 1.0 CB E:GLU124 4.5 39.9 1.0 CB D:ARG15 4.5 36.6 1.0 PA D:ADP1001 4.6 37.0 1.0 CD D:LYS102 4.6 31.4 1.0 C5' D:ADP1001 4.7 37.0 1.0 NE D:ARG15 4.7 36.6 1.0 O D:ALA76 4.7 28.4 1.0 CZ D:ARG15 4.7 36.6 1.0 N D:GLY17 4.9 31.3 1.0 N D:GLY14 4.9 33.8 1.0

Magnesium binding site 3 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg302 b:44.7 occ:1.00 O3B E:ADP301 2.0 43.1 1.0 O3A E:ADP301 2.1 43.1 1.0 PB E:ADP301 2.4 43.1 1.0 O2B E:ADP301 2.9 43.1 1.0 N E:ARG15 3.4 40.4 1.0 PA E:ADP301 3.5 43.1 1.0 NE E:ARG15 3.6 40.4 1.0 CA E:GLY14 3.8 39.1 1.0 O2A E:ADP301 3.8 43.1 1.0 O1B E:ADP301 3.8 43.1 1.0 CG E:ARG15 4.1 40.4 1.0 C E:GLY14 4.1 39.1 1.0 NH2 E:ARG15 4.2 40.4 1.0 CB E:ARG15 4.3 40.4 1.0 CZ E:ARG15 4.3 40.4 1.0 O1A E:ADP301 4.4 43.1 1.0 CD E:ARG15 4.5 40.4 1.0 CA E:ARG15 4.5 40.4 1.0 O5' E:ADP301 4.5 43.1 1.0 NH1 E:ARG40 4.8 45.9 1.0 C5' E:ADP301 4.8 43.1 1.0 O E:HOH401 4.8 39.7 1.0 NH2 E:ARG40 4.9 45.9 1.0

Magnesium binding site 4 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg302 b:41.8 occ:1.00 O3A F:ADP301 2.0 43.8 1.0 O3B F:ADP301 2.0 43.8 1.0 PB F:ADP301 2.4 43.8 1.0 O1B F:ADP301 3.0 43.8 1.0 PA F:ADP301 3.3 43.8 1.0 NE F:ARG15 3.4 41.3 1.0 O1A F:ADP301 3.6 43.8 1.0 N F:ARG15 3.6 41.3 1.0 O2B F:ADP301 3.8 43.8 1.0 NH2 F:ARG15 3.9 41.3 1.0 CA F:GLY14 3.9 38.3 1.0 O5' F:ADP301 4.0 43.8 1.0 CZ F:ARG15 4.1 41.3 1.0 CG F:ARG15 4.1 41.3 1.0 NH1 F:ARG40 4.2 45.5 1.0 C F:GLY14 4.3 38.3 1.0 CD F:ARG15 4.3 41.3 1.0 NH2 F:ARG40 4.4 45.5 1.0 CB F:ARG15 4.4 41.3 1.0 O2A F:ADP301 4.5 43.8 1.0 CA F:ARG15 4.6 41.3 1.0 CZ F:ARG40 4.7 45.5 1.0

Magnesium binding site 5 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:38.6 occ:1.00 O3B A:ADP1002 1.9 38.6 1.0 O A:HOH1101 3.3 32.9 1.0 N A:PHE16 3.4 33.4 1.0 PB A:ADP1002 3.4 38.6 1.0 N A:ARG15 3.4 37.4 1.0 CD L:GLU124 3.7 39.7 1.0 OE1 L:GLU124 3.7 39.7 1.0 OE2 L:GLU124 3.8 39.7 1.0 CE A:LYS102 3.9 32.6 1.0 CB A:PHE16 3.9 33.4 1.0 O2A A:ADP1002 3.9 38.6 1.0 O5' A:ADP1002 4.0 38.6 1.0 C A:GLY14 4.1 33.8 1.0 NZ A:LYS102 4.1 32.6 1.0 NE A:ARG15 4.1 37.4 1.0 CA A:ARG15 4.2 37.4 1.0 CB A:ARG15 4.2 37.4 1.0 CA A:GLY14 4.2 33.8 1.0 O2B A:ADP1002 4.2 38.6 1.0 NH2 A:ARG15 4.2 37.4 1.0 O1B A:ADP1002 4.2 38.6 1.0 O3A A:ADP1002 4.2 38.6 1.0 C A:ARG15 4.3 37.4 1.0 CA A:PHE16 4.3 33.4 1.0 CG L:GLU124 4.3 39.7 1.0 PA A:ADP1002 4.4 38.6 1.0 CB L:GLU124 4.5 39.7 1.0 CZ A:ARG15 4.6 37.4 1.0 O A:ALA76 4.8 28.4 1.0 CD A:LYS102 4.8 32.6 1.0 CG A:ARG15 4.9 37.4 1.0 N A:GLY17 4.9 31.7 1.0 N A:GLY14 4.9 33.8 1.0 O A:GLY14 5.0 33.8 1.0

Magnesium binding site 6 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:37.8 occ:1.00 O3B B:ADP1001 2.0 37.3 1.0 O1A B:ADP1001 2.9 37.3 1.0 PB B:ADP1001 3.3 37.3 1.0 O B:HOH1102 3.3 34.1 1.0 O1B B:ADP1001 3.6 37.3 1.0 N B:ARG15 3.7 37.3 1.0 OE1 J:GLU124 3.8 40.4 1.0 CE B:LYS102 3.8 31.4 1.0 NZ B:LYS102 3.9 31.4 1.0 PA B:ADP1001 4.0 37.3 1.0 N B:PHE16 4.0 32.7 1.0 CD J:GLU124 4.0 40.4 1.0 O3A B:ADP1001 4.1 37.3 1.0 CA B:GLY14 4.1 34.6 1.0 NH2 B:ARG15 4.2 37.3 1.0 OE2 J:GLU124 4.2 40.4 1.0 C B:GLY14 4.3 34.6 1.0 NE B:ARG15 4.3 37.3 1.0 CB B:PHE16 4.4 32.7 1.0 O5' B:ADP1001 4.4 37.3 1.0 O2B B:ADP1001 4.4 37.3 1.0 C5' B:ADP1001 4.4 37.3 1.0 O B:ALA76 4.6 28.7 1.0 CA B:ARG15 4.6 37.3 1.0 CB B:ARG15 4.6 37.3 1.0 CG J:GLU124 4.7 40.4 1.0 CZ B:ARG15 4.7 37.3 1.0 CA B:GLY78 4.8 37.5 1.0 C B:ARG15 4.8 37.3 1.0 CA B:PHE16 4.8 32.7 1.0 CD B:LYS102 4.9 31.4 1.0 N B:GLY78 4.9 37.5 1.0 N B:GLY14 4.9 34.6 1.0

Magnesium binding site 7 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg302 b:30.0 occ:1.00 O2B J:ADP301 2.1 44.6 1.0 PB J:ADP301 3.1 44.6 1.0 O1B J:ADP301 3.1 44.6 1.0 O J:HOH407 3.3 45.9 1.0 N J:ARG15 3.5 42.9 1.0 O2A J:ADP301 3.5 44.6 1.0 NE J:ARG15 3.6 42.9 1.0 CA J:GLY14 3.9 39.5 1.0 CG J:ARG15 3.9 42.9 1.0 O3A J:ADP301 4.0 44.6 1.0 NH1 J:ARG40 4.0 45.5 1.0 O5' J:ADP301 4.1 44.6 1.0 PA J:ADP301 4.2 44.6 1.0 C J:GLY14 4.2 39.5 1.0 CB J:ARG15 4.3 42.9 1.0 O3B J:ADP301 4.3 44.6 1.0 CD J:ARG15 4.3 42.9 1.0 NH2 J:ARG40 4.4 45.5 1.0 NH2 J:ARG15 4.5 42.9 1.0 CZ J:ARG15 4.5 42.9 1.0 CA J:ARG15 4.5 42.9 1.0 O J:HOH405 4.5 49.5 1.0 CZ J:ARG40 4.6 45.5 1.0

Magnesium binding site 8 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Ktrab Complex within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg302 b:44.6 occ:1.00 O2B L:ADP301 2.0 44.9 1.0 O2A L:ADP301 2.0 44.9 1.0 PB L:ADP301 3.1 44.9 1.0 PA L:ADP301 3.2 44.9 1.0 O3A L:ADP301 3.3 44.9 1.0 N L:ARG15 3.4 40.8 1.0 NE L:ARG15 3.5 40.8 1.0 O1B L:ADP301 3.8 44.9 1.0 CG L:ARG15 3.8 40.8 1.0 CA L:GLY14 3.8 38.3 1.0 O5' L:ADP301 3.9 44.9 1.0 C L:GLY14 4.1 38.3 1.0 CB L:ARG15 4.2 40.8 1.0 CD L:ARG15 4.2 40.8 1.0 NH2 L:ARG15 4.4 40.8 1.0 CZ L:ARG15 4.4 40.8 1.0 O3B L:ADP301 4.4 44.9 1.0 CA L:ARG15 4.4 40.8 1.0 O1A L:ADP301 4.5 44.9 1.0 NH1 L:ARG40 4.6 46.3 1.0 NH2 L:ARG40 4.7 46.3 1.0 CZ L:ARG40 4.9 46.3 1.0

J.Stautz, J.Vonck, J.Stautz. N/A N/A.