Atomistry » Magnesium » PDB 7zp9-8a12 » 7zp9
Atomistry »
  Magnesium »
    PDB 7zp9-8a12 »
      7zp9 »

Magnesium in PDB 7zp9: Ktrab Complex

Other elements in 7zp9:

The structure of Ktrab Complex also contains other interesting chemical elements:

Potassium (K) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ktrab Complex (pdb code 7zp9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Ktrab Complex, PDB code: 7zp9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 1 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg1001

b:36.6
occ:1.00
O3B H:ADP1002 2.0 36.9 1.0
NZ H:LYS102 3.1 32.9 1.0
N H:PHE16 3.2 32.9 1.0
O H:HOH1101 3.2 31.4 1.0
N H:ARG15 3.4 35.8 1.0
OE2 F:GLU124 3.4 40.0 1.0
PB H:ADP1002 3.5 36.9 1.0
CD F:GLU124 3.6 40.0 1.0
CB H:PHE16 3.7 32.9 1.0
O2A H:ADP1002 3.8 36.9 1.0
OE1 F:GLU124 3.9 40.0 1.0
C H:GLY14 4.0 32.8 1.0
CA H:GLY14 4.1 32.8 1.0
CA H:ARG15 4.1 35.8 1.0
CA H:PHE16 4.1 32.9 1.0
C H:ARG15 4.1 35.8 1.0
CB H:ARG15 4.1 35.8 1.0
O2B H:ADP1002 4.2 36.9 1.0
NH2 H:ARG15 4.2 35.8 1.0
O1B H:ADP1002 4.3 36.9 1.0
CG F:GLU124 4.3 40.0 1.0
NE H:ARG15 4.4 35.8 1.0
CE H:LYS102 4.4 32.9 1.0
O3A H:ADP1002 4.4 36.9 1.0
CZ H:ARG15 4.6 35.8 1.0
CB F:GLU124 4.6 40.0 1.0
C5' H:ADP1002 4.7 36.9 1.0
PA H:ADP1002 4.7 36.9 1.0
CD H:LYS102 4.8 32.9 1.0
O H:ALA76 4.8 27.9 1.0
N H:GLY17 4.9 30.4 1.0
N H:GLY14 4.9 32.8 1.0
O H:GLY14 4.9 32.8 1.0
CG H:ARG15 5.0 35.8 1.0

Magnesium binding site 2 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 2 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1002

b:35.8
occ:1.00
O3B D:ADP1001 2.0 37.0 1.0
O D:HOH1101 3.2 33.1 1.0
N D:PHE16 3.4 31.8 1.0
OE1 E:GLU124 3.5 39.9 1.0
PB D:ADP1001 3.5 37.0 1.0
N D:ARG15 3.6 36.6 1.0
CE D:LYS102 3.7 31.4 1.0
NZ D:LYS102 3.7 31.4 1.0
CD E:GLU124 3.7 39.9 1.0
CB D:PHE16 3.7 31.8 1.0
O1A D:ADP1001 3.8 37.0 1.0
OE2 E:GLU124 3.9 39.9 1.0
CA D:GLY14 4.1 33.8 1.0
O1B D:ADP1001 4.1 37.0 1.0
C D:GLY14 4.1 33.8 1.0
CA D:PHE16 4.2 31.8 1.0
O3A D:ADP1001 4.2 37.0 1.0
CA D:ARG15 4.4 36.6 1.0
C D:ARG15 4.4 36.6 1.0
NH2 D:ARG15 4.4 36.6 1.0
O2B D:ADP1001 4.5 37.0 1.0
CG E:GLU124 4.5 39.9 1.0
CB E:GLU124 4.5 39.9 1.0
CB D:ARG15 4.5 36.6 1.0
PA D:ADP1001 4.6 37.0 1.0
CD D:LYS102 4.6 31.4 1.0
C5' D:ADP1001 4.7 37.0 1.0
NE D:ARG15 4.7 36.6 1.0
O D:ALA76 4.7 28.4 1.0
CZ D:ARG15 4.7 36.6 1.0
N D:GLY17 4.9 31.3 1.0
N D:GLY14 4.9 33.8 1.0

Magnesium binding site 3 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 3 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg302

b:44.7
occ:1.00
O3B E:ADP301 2.0 43.1 1.0
O3A E:ADP301 2.1 43.1 1.0
PB E:ADP301 2.4 43.1 1.0
O2B E:ADP301 2.9 43.1 1.0
N E:ARG15 3.4 40.4 1.0
PA E:ADP301 3.5 43.1 1.0
NE E:ARG15 3.6 40.4 1.0
CA E:GLY14 3.8 39.1 1.0
O2A E:ADP301 3.8 43.1 1.0
O1B E:ADP301 3.8 43.1 1.0
CG E:ARG15 4.1 40.4 1.0
C E:GLY14 4.1 39.1 1.0
NH2 E:ARG15 4.2 40.4 1.0
CB E:ARG15 4.3 40.4 1.0
CZ E:ARG15 4.3 40.4 1.0
O1A E:ADP301 4.4 43.1 1.0
CD E:ARG15 4.5 40.4 1.0
CA E:ARG15 4.5 40.4 1.0
O5' E:ADP301 4.5 43.1 1.0
NH1 E:ARG40 4.8 45.9 1.0
C5' E:ADP301 4.8 43.1 1.0
O E:HOH401 4.8 39.7 1.0
NH2 E:ARG40 4.9 45.9 1.0

Magnesium binding site 4 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 4 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg302

b:41.8
occ:1.00
O3A F:ADP301 2.0 43.8 1.0
O3B F:ADP301 2.0 43.8 1.0
PB F:ADP301 2.4 43.8 1.0
O1B F:ADP301 3.0 43.8 1.0
PA F:ADP301 3.3 43.8 1.0
NE F:ARG15 3.4 41.3 1.0
O1A F:ADP301 3.6 43.8 1.0
N F:ARG15 3.6 41.3 1.0
O2B F:ADP301 3.8 43.8 1.0
NH2 F:ARG15 3.9 41.3 1.0
CA F:GLY14 3.9 38.3 1.0
O5' F:ADP301 4.0 43.8 1.0
CZ F:ARG15 4.1 41.3 1.0
CG F:ARG15 4.1 41.3 1.0
NH1 F:ARG40 4.2 45.5 1.0
C F:GLY14 4.3 38.3 1.0
CD F:ARG15 4.3 41.3 1.0
NH2 F:ARG40 4.4 45.5 1.0
CB F:ARG15 4.4 41.3 1.0
O2A F:ADP301 4.5 43.8 1.0
CA F:ARG15 4.6 41.3 1.0
CZ F:ARG40 4.7 45.5 1.0

Magnesium binding site 5 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 5 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:38.6
occ:1.00
O3B A:ADP1002 1.9 38.6 1.0
O A:HOH1101 3.3 32.9 1.0
N A:PHE16 3.4 33.4 1.0
PB A:ADP1002 3.4 38.6 1.0
N A:ARG15 3.4 37.4 1.0
CD L:GLU124 3.7 39.7 1.0
OE1 L:GLU124 3.7 39.7 1.0
OE2 L:GLU124 3.8 39.7 1.0
CE A:LYS102 3.9 32.6 1.0
CB A:PHE16 3.9 33.4 1.0
O2A A:ADP1002 3.9 38.6 1.0
O5' A:ADP1002 4.0 38.6 1.0
C A:GLY14 4.1 33.8 1.0
NZ A:LYS102 4.1 32.6 1.0
NE A:ARG15 4.1 37.4 1.0
CA A:ARG15 4.2 37.4 1.0
CB A:ARG15 4.2 37.4 1.0
CA A:GLY14 4.2 33.8 1.0
O2B A:ADP1002 4.2 38.6 1.0
NH2 A:ARG15 4.2 37.4 1.0
O1B A:ADP1002 4.2 38.6 1.0
O3A A:ADP1002 4.2 38.6 1.0
C A:ARG15 4.3 37.4 1.0
CA A:PHE16 4.3 33.4 1.0
CG L:GLU124 4.3 39.7 1.0
PA A:ADP1002 4.4 38.6 1.0
CB L:GLU124 4.5 39.7 1.0
CZ A:ARG15 4.6 37.4 1.0
O A:ALA76 4.8 28.4 1.0
CD A:LYS102 4.8 32.6 1.0
CG A:ARG15 4.9 37.4 1.0
N A:GLY17 4.9 31.7 1.0
N A:GLY14 4.9 33.8 1.0
O A:GLY14 5.0 33.8 1.0

Magnesium binding site 6 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 6 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:37.8
occ:1.00
O3B B:ADP1001 2.0 37.3 1.0
O1A B:ADP1001 2.9 37.3 1.0
PB B:ADP1001 3.3 37.3 1.0
O B:HOH1102 3.3 34.1 1.0
O1B B:ADP1001 3.6 37.3 1.0
N B:ARG15 3.7 37.3 1.0
OE1 J:GLU124 3.8 40.4 1.0
CE B:LYS102 3.8 31.4 1.0
NZ B:LYS102 3.9 31.4 1.0
PA B:ADP1001 4.0 37.3 1.0
N B:PHE16 4.0 32.7 1.0
CD J:GLU124 4.0 40.4 1.0
O3A B:ADP1001 4.1 37.3 1.0
CA B:GLY14 4.1 34.6 1.0
NH2 B:ARG15 4.2 37.3 1.0
OE2 J:GLU124 4.2 40.4 1.0
C B:GLY14 4.3 34.6 1.0
NE B:ARG15 4.3 37.3 1.0
CB B:PHE16 4.4 32.7 1.0
O5' B:ADP1001 4.4 37.3 1.0
O2B B:ADP1001 4.4 37.3 1.0
C5' B:ADP1001 4.4 37.3 1.0
O B:ALA76 4.6 28.7 1.0
CA B:ARG15 4.6 37.3 1.0
CB B:ARG15 4.6 37.3 1.0
CG J:GLU124 4.7 40.4 1.0
CZ B:ARG15 4.7 37.3 1.0
CA B:GLY78 4.8 37.5 1.0
C B:ARG15 4.8 37.3 1.0
CA B:PHE16 4.8 32.7 1.0
CD B:LYS102 4.9 31.4 1.0
N B:GLY78 4.9 37.5 1.0
N B:GLY14 4.9 34.6 1.0

Magnesium binding site 7 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 7 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg302

b:30.0
occ:1.00
O2B J:ADP301 2.1 44.6 1.0
PB J:ADP301 3.1 44.6 1.0
O1B J:ADP301 3.1 44.6 1.0
O J:HOH407 3.3 45.9 1.0
N J:ARG15 3.5 42.9 1.0
O2A J:ADP301 3.5 44.6 1.0
NE J:ARG15 3.6 42.9 1.0
CA J:GLY14 3.9 39.5 1.0
CG J:ARG15 3.9 42.9 1.0
O3A J:ADP301 4.0 44.6 1.0
NH1 J:ARG40 4.0 45.5 1.0
O5' J:ADP301 4.1 44.6 1.0
PA J:ADP301 4.2 44.6 1.0
C J:GLY14 4.2 39.5 1.0
CB J:ARG15 4.3 42.9 1.0
O3B J:ADP301 4.3 44.6 1.0
CD J:ARG15 4.3 42.9 1.0
NH2 J:ARG40 4.4 45.5 1.0
NH2 J:ARG15 4.5 42.9 1.0
CZ J:ARG15 4.5 42.9 1.0
CA J:ARG15 4.5 42.9 1.0
O J:HOH405 4.5 49.5 1.0
CZ J:ARG40 4.6 45.5 1.0

Magnesium binding site 8 out of 8 in 7zp9

Go back to Magnesium Binding Sites List in 7zp9
Magnesium binding site 8 out of 8 in the Ktrab Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Ktrab Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:44.6
occ:1.00
O2B L:ADP301 2.0 44.9 1.0
O2A L:ADP301 2.0 44.9 1.0
PB L:ADP301 3.1 44.9 1.0
PA L:ADP301 3.2 44.9 1.0
O3A L:ADP301 3.3 44.9 1.0
N L:ARG15 3.4 40.8 1.0
NE L:ARG15 3.5 40.8 1.0
O1B L:ADP301 3.8 44.9 1.0
CG L:ARG15 3.8 40.8 1.0
CA L:GLY14 3.8 38.3 1.0
O5' L:ADP301 3.9 44.9 1.0
C L:GLY14 4.1 38.3 1.0
CB L:ARG15 4.2 40.8 1.0
CD L:ARG15 4.2 40.8 1.0
NH2 L:ARG15 4.4 40.8 1.0
CZ L:ARG15 4.4 40.8 1.0
O3B L:ADP301 4.4 44.9 1.0
CA L:ARG15 4.4 40.8 1.0
O1A L:ADP301 4.5 44.9 1.0
NH1 L:ARG40 4.6 46.3 1.0
NH2 L:ARG40 4.7 46.3 1.0
CZ L:ARG40 4.9 46.3 1.0

Reference:

J.Stautz, J.Vonck, J.Stautz. N/A N/A.
Page generated: Thu Oct 3 17:03:27 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy