Magnesium in PDB 7zz2: Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa

Enzymatic activity of Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa

All present enzymatic activity of Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa:
6.4.1.1;

Other elements in 7zz2:

The structure of Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa (pdb code 7zz2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa, PDB code: 7zz2:

Magnesium binding site 1 out of 1 in 7zz2

Go back to Magnesium Binding Sites List in 7zz2
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of "Ct Pyr" Conformation of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1201

b:78.2
occ:1.00
 O A:HOH1330 2.4 63.2 1.0
O A:THR522 2.6 63.8 1.0
O A:VAL519 2.7 60.9 1.0
OD2 A:ASP753 2.8 71.8 1.0
C A:THR522 3.8 62.0 1.0
CG A:ASP753 3.8 71.3 1.0
O A:LYS520 3.8 71.4 1.0
C A:VAL519 3.9 55.3 1.0
CB A:ASP753 4.1 62.4 1.0
NH2 A:ARG783 4.1 59.3 1.0
C A:LYS520 4.1 62.1 1.0
CA A:LYS520 4.2 53.9 1.0
N A:THR522 4.3 65.5 1.0
CA A:ASP753 4.3 55.4 1.0
O A:GLU524 4.3 72.4 1.0
CA A:THR522 4.4 60.8 1.0
CB A:THR522 4.4 61.1 1.0
N A:LYS520 4.5 57.1 1.0
CG1 A:VAL519 4.7 47.1 1.0
N A:LYS523 4.8 69.8 1.0
OD1 A:ASP753 4.8 67.8 1.0

Reference:

J.P.Lopez-Alonso, M.Lazaro, D.Gil-Carton, P.H.Choi, L.Tong, M.Valle. Cryoem Structural Exploration of Catalytically Active Enzyme Pyruvate Carboxylase. Nat Commun V. 13 6185 2022.
ISSN: ESSN 2041-1723
PubMed: 36261450
DOI: 10.1038/S41467-022-33987-2
Page generated: Thu Oct 3 17:07:33 2024

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