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Magnesium in PDB 7zz6: Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa

Enzymatic activity of Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa

All present enzymatic activity of Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa:
6.4.1.1;

Other elements in 7zz6:

The structure of Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa (pdb code 7zz6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa, PDB code: 7zz6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7zz6

Go back to Magnesium Binding Sites List in 7zz6
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1201

b:29.6
occ:1.00
O D:VAL519 2.5 28.6 1.0
O D:HOH1346 2.6 26.8 1.0
OD1 D:ASP753 2.6 25.7 1.0
O D:THR522 2.6 28.8 1.0
CG D:ASP753 3.6 25.7 1.0
C D:VAL519 3.7 28.6 1.0
C D:THR522 3.7 28.8 1.0
O D:LYS520 3.8 29.4 1.0
CB D:ASP753 4.1 25.7 1.0
C D:LYS520 4.1 29.4 1.0
N D:THR522 4.1 28.8 1.0
CA D:LYS520 4.2 29.4 1.0
CA D:ASP753 4.3 25.7 1.0
CA D:THR522 4.3 28.8 1.0
CB D:THR522 4.3 28.8 1.0
N D:LYS520 4.4 29.4 1.0
O D:GLU524 4.4 28.8 1.0
NH2 D:ARG783 4.5 25.6 1.0
CG1 D:VAL519 4.6 28.6 1.0
OD2 D:ASP753 4.6 25.7 1.0
CA D:VAL519 4.8 28.6 1.0
N D:ASN521 4.8 29.6 1.0
N D:LYS523 4.9 29.4 1.0
O D:ASP753 5.0 25.7 1.0

Magnesium binding site 2 out of 2 in 7zz6

Go back to Magnesium Binding Sites List in 7zz6
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of "Ct-Ct Dimer" of Lactococcus Lactis Pyruvate Carboxylase with Acetyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1201

b:33.6
occ:1.00
OD2 A:ASP753 1.4 30.7 1.0
CG A:ASP753 2.4 30.7 1.0
O A:VAL519 2.6 32.8 1.0
O A:HOH1301 2.7 30.3 1.0
O A:THR522 2.7 33.0 1.0
OD1 A:ASP753 2.8 30.7 1.0
CB A:ASP753 3.7 30.7 1.0
O A:LYS520 3.7 34.4 1.0
C A:VAL519 3.7 32.8 1.0
C A:THR522 3.9 33.0 1.0
C A:LYS520 4.0 34.4 1.0
CA A:LYS520 4.1 34.4 1.0
CA A:ASP753 4.3 30.7 1.0
N A:THR522 4.3 33.0 1.0
N A:LYS520 4.4 34.4 1.0
CA A:THR522 4.5 33.0 1.0
CB A:THR522 4.6 33.0 1.0
NH2 A:ARG783 4.6 28.7 1.0
O A:GLU524 4.6 32.1 1.0
CG1 A:VAL519 4.7 32.8 1.0
N A:ASN521 4.9 34.4 1.0
CA A:VAL519 4.9 32.8 1.0
N A:LYS523 5.0 33.5 1.0

Reference:

J.P.Lopez-Alonso, M.Lazaro, D.Gil-Carton, P.H.Choi, A.Dodu, L.Tong, M.Valle. Cryoem Structural Exploration of Catalytically Active Enzyme Pyruvate Carboxylase. Nat Commun V. 13 6185 2022.
ISSN: ESSN 2041-1723
PubMed: 36261450
DOI: 10.1038/S41467-022-33987-2
Page generated: Thu Oct 3 17:08:01 2024

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