Magnesium in PDB 8a5q: Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna

The binding sites of Magnesium atom in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna (pdb code 8a5q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna, PDB code: 8a5q:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna within 5.0Å range: probe atom residue distance (Å) B Occ U:Mg901 b:72.0 occ:1.00 O1B U:ATP900 1.9 76.7 1.0 O2G U:ATP900 2.1 87.8 1.0 PB U:ATP900 3.2 45.5 1.0 PG U:ATP900 3.4 63.5 1.0 OE2 U:GLU336 3.4 242.4 1.0 O3B U:ATP900 3.7 50.0 1.0 O1G U:ATP900 4.0 47.3 1.0 O3A U:ATP900 4.1 49.4 1.0 NE2 U:HIS110 4.2 72.6 1.0 O2A U:ATP900 4.3 50.8 1.0 O2B U:ATP900 4.4 65.4 1.0 CE1 U:HIS110 4.4 71.0 1.0 CD U:GLU336 4.6 193.8 1.0 O3G U:ATP900 4.6 41.3 1.0 O U:PRO111 4.6 93.3 1.0 PA U:ATP900 4.6 58.1 1.0 CA U:GLY112 4.8 62.9 1.0 OD1 U:ASP353 4.8 154.9 1.0 NH1 U:ARG117 4.9 74.5 1.0 NZ U:LYS358 4.9 152.0 1.0 CA U:GLY355 4.9 78.9 1.0 O1A U:ATP900 5.0 63.9 1.0 OE1 U:GLU336 5.0 237.1 1.0

Magnesium binding site 2 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna within 5.0Å range: probe atom residue distance (Å) B Occ V:Mg501 b:66.3 occ:1.00 O2G V:ATP500 2.0 123.6 1.0 O2B V:ATP500 2.1 73.9 1.0 PG V:ATP500 3.4 63.6 1.0 PB V:ATP500 3.4 48.9 1.0 O2A V:ATP500 3.6 43.9 1.0 O3B V:ATP500 3.7 62.4 1.0 O1G V:ATP500 4.2 114.4 1.0 O3G V:ATP500 4.4 72.0 1.0 O3A V:ATP500 4.4 41.4 1.0 O1B V:ATP500 4.4 48.2 1.0 PA V:ATP500 4.4 43.1 1.0 OE1 V:GLN137 4.5 97.0 1.0 NZ V:LYS18 4.6 84.7 1.0 OD2 V:ASP11 4.6 102.1 1.0 CD V:GLN137 4.8 94.2 1.0 CA V:GLY156 4.9 66.0 1.0 NE2 V:GLN137 4.9 113.6 1.0

Magnesium binding site 3 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Straight Dna within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg501 b:96.4 occ:1.00 O2G W:ATP500 1.9 87.6 1.0 O1B W:ATP500 1.9 48.5 1.0 PG W:ATP500 3.2 67.2 1.0 PB W:ATP500 3.2 56.2 1.0 O3B W:ATP500 3.6 53.0 1.0 O3A W:ATP500 4.0 57.2 1.0 O1G W:ATP500 4.0 79.3 1.0 O3G W:ATP500 4.3 56.7 1.0 O2B W:ATP500 4.4 53.5 1.0 O1A W:ATP500 4.8 97.1 1.0 CG2 W:THR180 4.8 120.8 1.0 PA W:ATP500 4.9 53.4 1.0 OD1 W:ASP197 4.9 183.3 1.0 NH2 W:ARG34 4.9 103.6 1.0

F.Kunert, F.J.Metzner, J.Jung, M.Hopfler, S.Woike, K.Schall, D.Kostrewa, M.Moldt, J.X.Chen, S.Bantele, B.Pfander, S.Eustermann, K.P.Hopfner. Structural Mechanism of Extranucleosomal Dna Readout By the INO80 Complex. Sci Adv V. 8 D3189 2022.
ISSN: ESSN 2375-2548
PubMed: 36490333
DOI: 10.1126/SCIADV.ADD3189