Magnesium in PDB 8ad1: Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State

Enzymatic activity of Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State

All present enzymatic activity of Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State:
2.7.7.6;

Other elements in 8ad1:

The structure of Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State (pdb code 8ad1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State, PDB code: 8ad1:

Magnesium binding site 1 out of 1 in 8ad1

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Magnesium Binding Sites List in 8ad1

Magnesium binding site 1 out of 1 in the Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase at U-Rich Pause Bound to Rna Putl Triple Mutant - Pause Prone, Closed Clamp State within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg1501 b:156.7 occ:1.00	OD2	D:ASP462	2.1	141.6	1.0
	O3'	R:G93	2.1	157.1	1.0
	OD1	D:ASP460	2.3	136.3	1.0
	CG	D:ASP462	2.7	141.6	1.0
	OD1	D:ASP462	2.7	141.6	1.0
	CG	D:ASP460	3.1	136.3	1.0
	OD2	D:ASP460	3.1	136.3	1.0
	OD1	D:ASP464	3.2	137.3	1.0
	C3'	R:G93	3.3	157.1	1.0
	OD2	D:ASP464	3.6	137.3	1.0
	C4'	R:G93	3.6	157.1	1.0
	O2'	R:G93	3.6	157.1	1.0
	CG	D:ASP464	3.7	137.3	1.0
	C2'	R:G93	4.1	157.1	1.0
	CB	D:ASP462	4.1	141.6	1.0
	C5'	R:G93	4.2	157.1	1.0
	O	D:ASP460	4.5	136.3	1.0
	CB	D:ASP460	4.5	136.3	1.0
	N	D:ASP460	4.7	136.3	1.0
	O4'	R:G93	4.9	157.1	1.0
	NH2	D:ARG425	4.9	120.0	1.0

Reference:

S.Dey, C.Batisse, J.Shukla, M.W.Webster, M.Takacs, C.Saint-Andre, A.Weixlbaumer. Structural Insights Into Rna-Mediated Transcription Regulation in Bacteria. Mol.Cell V. 82 3885 2022.
ISSN: ISSN 1097-2765
PubMed: 36220101
DOI: 10.1016/J.MOLCEL.2022.09.020

Page generated: Thu Oct 3 18:04:30 2024

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