Magnesium in PDB 8aei: X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal

Protein crystallography data

The structure of X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal, PDB code: 8aei was solved by M.Schwartz, L.Briand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.91 / 1.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.562, 48.685, 67.102, 90, 105.2, 90
R / Rfree (%) 19 / 21.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal (pdb code 8aei). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal, PDB code: 8aei:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8aei

Go back to Magnesium Binding Sites List in 8aei
Magnesium binding site 1 out of 2 in the X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:30.4
occ:1.00
OD2 A:ASP155 2.1 28.6 1.0
O A:HOH313 2.1 27.6 1.0
CG A:ASP155 3.0 29.7 1.0
OD1 A:ASP155 3.3 29.4 1.0
O A:SER152 4.1 29.6 1.0
CB A:ASP155 4.4 25.3 1.0

Magnesium binding site 2 out of 2 in 8aei

Go back to Magnesium Binding Sites List in 8aei
Magnesium binding site 2 out of 2 in the X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Canis Familiaris Odorant Binding Protein 2 Bound to Citronellal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:31.1
occ:1.00
O B:HOH320 1.9 33.7 1.0
OD2 B:ASP155 2.0 32.8 1.0
O B:HOH313 2.0 31.9 1.0
O B:HOH303 2.1 41.1 1.0
CG B:ASP155 2.9 38.9 1.0
OD1 B:ASP155 3.2 39.0 1.0
O B:SER152 3.8 36.7 1.0
CB B:ASP155 4.3 34.5 1.0
NE2 B:GLN158 4.7 49.6 1.0

Reference:

M.Glaz, M.Schwartz, L.Briand. Structure of Dog Odorant Binding Protein To Be Published.
Page generated: Thu Oct 3 18:06:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy