Atomistry » Magnesium » PDB 8ae7-8aq1 » 8ap1
Atomistry »
  Magnesium »
    PDB 8ae7-8aq1 »
      8ap1 »

Magnesium in PDB 8ap1: Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2)

Enzymatic activity of Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2)

All present enzymatic activity of Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2):
2.7.7.6;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2) (pdb code 8ap1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2), PDB code: 8ap1:

Magnesium binding site 1 out of 1 in 8ap1

Go back to Magnesium Binding Sites List in 8ap1
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1401

b:13.7
occ:1.00
O1B A:GTP1402 2.0 18.5 1.0
OD1 A:ASP945 2.0 13.9 1.0
OD2 A:ASP1189 2.1 12.1 1.0
O2G A:GTP1402 2.1 18.5 1.0
O A:GLY946 2.1 12.3 1.0
O1A A:GTP1402 2.2 18.5 1.0
PB A:GTP1402 3.0 18.5 1.0
PA A:GTP1402 3.1 18.5 1.0
O3A A:GTP1402 3.2 18.5 1.0
CG A:ASP1189 3.2 12.1 1.0
CG A:ASP945 3.2 13.9 1.0
PG A:GTP1402 3.3 18.5 1.0
C A:GLY946 3.3 12.3 1.0
O3B A:GTP1402 3.4 18.5 1.0
O5' A:GTP1402 3.5 18.5 1.0
OD1 A:ASP1189 3.7 12.1 1.0
OD2 A:ASP945 3.9 13.9 1.0
N A:GLY946 4.0 12.3 1.0
CA A:GLY946 4.2 12.3 1.0
O1G A:GTP1402 4.2 18.5 1.0
CB A:ASP945 4.3 13.9 1.0
N A:THR947 4.3 12.4 1.0
O2B A:GTP1402 4.4 18.5 1.0
C A:ASP945 4.4 13.9 1.0
O3G A:GTP1402 4.4 18.5 1.0
CB A:ASP1189 4.4 12.1 1.0
CA A:THR947 4.5 12.4 1.0
O2A A:GTP1402 4.5 18.5 1.0
C5' A:GTP1402 4.6 18.5 1.0
N A:CYS948 4.7 10.8 1.0
CA A:ASP945 4.9 13.9 1.0
O A:ASP945 4.9 13.9 1.0
C A:THR947 5.0 12.4 1.0

Reference:

Q.Goovaerts, J.Shen, S.S.Patel, K.Das. Structures of Yeast Mitochondrial Dna Transcription Initiation Pathway at Single Nucleotide Addition Steps To Be Published.
Page generated: Thu Oct 3 18:12:23 2024

Last articles

Sr in 1SFC
Sr in 1OQ7
Sr in 1U3E
Sr in 1VC0
Sr in 1F1T
Sr in 1J8G
Sr in 1NVY
Sr in 1TJM
Sr in 1NUV
Sr in 1M6G
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy