Magnesium in PDB 8ap1: Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2)

Enzymatic activity of Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2)

Magnesium Binding Sites:

Magnesium binding site 1 out of 1 in 8ap1

Magnesium Binding Sites List in 8ap1

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Yeast Mitochondrial Rna Polymerase Transcription Initiation Complex with Two Gtp Molecules Poised For De Novo Initiation (IC2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1401 b:13.7 occ:1.00 O1B A:GTP1402 2.0 18.5 1.0 OD1 A:ASP945 2.0 13.9 1.0 OD2 A:ASP1189 2.1 12.1 1.0 O2G A:GTP1402 2.1 18.5 1.0 O A:GLY946 2.1 12.3 1.0 O1A A:GTP1402 2.2 18.5 1.0 PB A:GTP1402 3.0 18.5 1.0 PA A:GTP1402 3.1 18.5 1.0 O3A A:GTP1402 3.2 18.5 1.0 CG A:ASP1189 3.2 12.1 1.0 CG A:ASP945 3.2 13.9 1.0 PG A:GTP1402 3.3 18.5 1.0 C A:GLY946 3.3 12.3 1.0 O3B A:GTP1402 3.4 18.5 1.0 O5' A:GTP1402 3.5 18.5 1.0 OD1 A:ASP1189 3.7 12.1 1.0 OD2 A:ASP945 3.9 13.9 1.0 N A:GLY946 4.0 12.3 1.0 CA A:GLY946 4.2 12.3 1.0 O1G A:GTP1402 4.2 18.5 1.0 CB A:ASP945 4.3 13.9 1.0 N A:THR947 4.3 12.4 1.0 O2B A:GTP1402 4.4 18.5 1.0 C A:ASP945 4.4 13.9 1.0 O3G A:GTP1402 4.4 18.5 1.0 CB A:ASP1189 4.4 12.1 1.0 CA A:THR947 4.5 12.4 1.0 O2A A:GTP1402 4.5 18.5 1.0 C5' A:GTP1402 4.6 18.5 1.0 N A:CYS948 4.7 10.8 1.0 CA A:ASP945 4.9 13.9 1.0 O A:ASP945 4.9 13.9 1.0 C A:THR947 5.0 12.4 1.0

Reference: