Magnesium in PDB 8av5: Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita

Enzymatic activity of Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita

All present enzymatic activity of Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita:
1.11.2.1;

Protein crystallography data

The structure of Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita, PDB code: 8av5 was solved by T.F.Mielke, G.Grogan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	59.18 / 1.62
*Space group*	P 3₁ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	77.66, 77.66, 123.883, 90, 90, 120
*R / R_free (%)*	18.2 / 21

Other elements in 8av5:

The structure of Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Iron	(Fe)	1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita (pdb code 8av5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita, PDB code: 8av5:

Magnesium binding site 1 out of 1 in 8av5

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Magnesium Binding Sites List in 8av5

Magnesium binding site 1 out of 1 in the Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg401 b:21.1 occ:1.00	OE2	A:GLU122	2.0	24.7	1.0
	O1A	A:HEM404	2.1	5.6	1.0
	O	A:GLY123	2.1	24.0	1.0
	O	A:HOH654	2.1	22.8	1.0
	OG	A:SER126	2.2	22.5	1.0
	O	A:HOH547	2.2	21.3	1.0
	CGA	A:HEM404	3.1	5.5	1.0
	CD	A:GLU122	3.1	22.9	1.0
	C	A:GLY123	3.3	23.4	1.0
	CB	A:SER126	3.4	21.2	1.0
	O2A	A:HEM404	3.4	5.8	1.0
	CG	A:GLU122	3.5	22.5	1.0
	N	A:GLY123	3.6	25.4	1.0
	O	A:HOH624	4.0	24.4	1.0
	CA	A:GLY123	4.0	25.5	1.0
	O	A:HOH652	4.1	23.4	1.0
	OE1	A:GLU122	4.2	24.9	1.0
	O	A:HOH522	4.3	24.3	1.0
	N	A:ASP124	4.3	27.6	1.0
	CBA	A:HEM404	4.4	5.5	1.0
	O	A:ASN137	4.4	27.4	1.0
	NH2	A:ARG189	4.4	24.6	1.0
	CA	A:SER126	4.5	23.4	1.0
	N	A:SER126	4.5	22.9	1.0
	C	A:GLU122	4.6	24.0	1.0
	CA	A:ASP124	4.6	26.6	1.0
	O	A:GLY130	4.7	26.5	1.0
	CB	A:GLU122	4.8	24.1	1.0
	CZ	A:ARG189	4.8	26.1	1.0
	C	A:ASP124	4.8	25.2	1.0
	CA	A:GLU122	4.8	26.3	1.0
	CB	A:ARG129	4.8	25.6	1.0
	CAA	A:HEM404	4.9	5.5	1.0
	CB	A:ASN137	5.0	26.1	1.0

Reference:

T.F.Mielke, G.Grogan. Glycosylated Pada-I Mutant of Unspecific Peroxygenase From Agrocybe Aegerita To Be Published.

Page generated: Thu Oct 3 18:46:26 2024

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