Magnesium in PDB 8beg: Structure of Ig-Like Domains From Prgb

The structure of Structure of Ig-Like Domains From Prgb, PDB code: 8beg was solved by M.Jarva, A.Schmitt, R.P.-A.Berntsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.29 / 1.84
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	76, 87.5, 224.8, 90, 90, 90
R / Rfree (%)	20.9 / 24.6

The binding sites of Magnesium atom in the Structure of Ig-Like Domains From Prgb (pdb code 8beg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Ig-Like Domains From Prgb, PDB code: 8beg:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Ig-Like Domains From Prgb


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Ig-Like Domains From Prgb within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:51.8 occ:1.00 OD1 A:ASP974 2.0 54.4 1.0 O A:TYR975 2.3 42.5 1.0 O A:LYS1009 2.4 52.9 1.0 O A:HOH1563 2.5 58.1 1.0 O A:GLY1010 2.6 48.6 1.0 OE1 A:GLU977 2.9 47.6 1.0 CG A:ASP974 3.3 53.8 1.0 C A:GLY1010 3.3 46.4 1.0 C A:LYS1009 3.5 52.2 1.0 C A:TYR975 3.5 47.1 1.0 CA A:GLY1010 3.5 47.9 1.0 N A:TYR975 3.8 42.5 1.0 N A:GLY1010 3.9 48.4 1.0 OD2 A:ASP974 4.0 59.1 1.0 C A:ASP974 4.0 45.9 1.0 CD A:GLU977 4.1 52.9 1.0 CA A:ASP974 4.2 42.6 1.0 CG2 A:THR1011 4.2 42.4 1.0 CA A:TYR975 4.3 40.3 1.0 CB A:ASP974 4.3 41.7 1.0 N A:THR1011 4.4 41.9 1.0 N A:ASP976 4.5 41.8 1.0 O A:HOH1476 4.6 49.1 1.0 N A:GLU977 4.6 43.0 1.0 CA A:ASP976 4.7 46.2 1.0 O A:ASP974 4.7 42.8 1.0 OE2 A:GLU977 4.7 55.5 1.0 CA A:LYS1009 4.8 54.3 1.0 O A:HOH1661 4.9 62.8 1.0

Magnesium binding site 2 out of 2 in the Structure of Ig-Like Domains From Prgb


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Ig-Like Domains From Prgb within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1301 b:44.9 occ:1.00 O B:HOH1686 2.1 30.0 1.0 O B:TYR975 2.2 37.9 1.0 OD1 B:ASP974 2.3 44.7 1.0 O B:GLY1010 2.4 42.7 1.0 O B:LYS1009 2.4 43.7 1.0 OE1 B:GLU977 2.9 43.8 1.0 C B:GLY1010 3.1 39.3 1.0 CA B:GLY1010 3.4 39.2 1.0 C B:TYR975 3.4 39.4 1.0 C B:LYS1009 3.4 42.5 1.0 CG B:ASP974 3.5 46.7 1.0 O B:HOH1807 3.6 51.2 1.0 N B:TYR975 3.7 37.1 1.0 N B:GLY1010 3.9 36.6 1.0 CD B:GLU977 4.0 45.4 1.0 C B:ASP974 4.1 40.9 1.0 CA B:TYR975 4.2 34.9 1.0 N B:THR1011 4.2 38.5 1.0 CG2 B:THR1011 4.2 40.6 1.0 CA B:ASP974 4.3 41.3 1.0 OD2 B:ASP974 4.3 52.1 1.0 N B:ASP976 4.4 36.3 1.0 N B:GLU977 4.5 37.9 1.0 CB B:ASP974 4.5 41.7 1.0 CA B:ASP976 4.6 35.7 1.0 OE2 B:GLU977 4.6 50.4 1.0 CA B:LYS1009 4.7 44.3 1.0 O B:ASP974 4.8 40.8 1.0 O B:HOH1533 4.9 44.7 1.0 CA B:THR1011 4.9 37.6 1.0

W.-S.Sun, L.Lassinantti, M.Jarva, A.Schmitt, J.Ter Beek, R.P.-A.Berntsson. New Structural Insights Provide Mechanistic Understanding of Enterococcal Prgb Conjugation, Biofilm Formation and Virulence To Be Published.