Magnesium in PDB 8cqb: Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3

The structure of Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3 also contains other interesting chemical elements:

Aluminium	(Al)	2 atoms
Fluorine	(F)	6 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3 (pdb code 8cqb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3, PDB code: 8cqb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:26.8 occ:1.00 O2B A:GDP601 1.2 31.3 1.0 OG1 A:THR75 2.0 35.6 1.0 OG A:SER52 2.4 25.4 1.0 F1 A:AF3602 2.5 59.4 1.0 CB A:THR75 2.6 35.6 1.0 PB A:GDP601 2.6 31.3 1.0 O1A A:GDP601 3.2 31.3 1.0 O1B A:GDP601 3.4 31.3 1.0 CG2 A:THR75 3.5 35.6 1.0 CB A:SER52 3.5 25.4 1.0 O3A A:GDP601 3.5 31.3 1.0 O3B A:GDP601 3.5 31.3 1.0 OD2 A:ASP97 3.6 27.9 1.0 PA A:GDP601 3.8 31.3 1.0 CA A:THR75 3.9 35.6 1.0 N A:THR75 4.0 35.6 1.0 AL A:AF3602 4.0 67.9 1.0 O2A A:GDP601 4.2 31.3 1.0 O A:SER66 4.2 40.0 1.0 N A:SER52 4.3 25.4 1.0 OD1 A:ASP97 4.3 27.9 1.0 CG A:ASP97 4.4 27.9 1.0 CA A:SER52 4.5 25.4 1.0 O A:LEU67 4.5 35.3 1.0 F2 A:AF3602 4.6 56.5 1.0 C A:THR75 4.9 35.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:25.9 occ:1.00 OG1 B:THR75 2.0 36.8 1.0 OG B:SER52 2.0 29.5 1.0 O2B B:GDP601 2.0 28.5 1.0 F2 B:AF3602 2.2 53.6 1.0 CB B:THR75 2.4 36.8 1.0 OD2 B:ASP97 2.8 37.1 1.0 CG2 B:THR75 3.2 36.8 1.0 CB B:SER52 3.3 29.5 1.0 OD1 B:ASP97 3.4 37.1 1.0 PB B:GDP601 3.4 28.5 1.0 CG B:ASP97 3.5 37.1 1.0 AL B:AF3602 3.8 66.4 1.0 CA B:THR75 3.8 36.8 1.0 O3B B:GDP601 4.0 28.5 1.0 N B:THR75 4.1 36.8 1.0 O1B B:GDP601 4.2 28.5 1.0 N B:SER52 4.2 29.5 1.0 CA B:SER52 4.2 29.5 1.0 O B:SER66 4.3 44.5 1.0 F1 B:AF3602 4.4 53.2 1.0 O3A B:GDP601 4.4 28.5 1.0 O B:THR98 4.5 25.6 1.0 O2A B:GDP601 4.7 28.5 1.0 C B:THR75 4.9 36.8 1.0 CB B:ASP97 4.9 37.1 1.0

T.I.Kuhm, C.De Agrela Pinto, C.Taisne, S.Huber, N.Giannopolou, E.Pardon, J.Steyaert, A.J.Jakobi. Cryo-Em Structure of the Human GBP1 Dimer Bound to Gdp-ALF3 To Be Published.