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Magnesium in PDB 8cqh: Ntaya Virus Methyltransferase in Complex with Gtp and Sah

Protein crystallography data

The structure of Ntaya Virus Methyltransferase in Complex with Gtp and Sah, PDB code: 8cqh was solved by E.Boura, K.Krejcova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.40 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.25, 71.655, 50.413, 90, 93.15, 90
R / Rfree (%) 15.2 / 19

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ntaya Virus Methyltransferase in Complex with Gtp and Sah (pdb code 8cqh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ntaya Virus Methyltransferase in Complex with Gtp and Sah, PDB code: 8cqh:

Magnesium binding site 1 out of 1 in 8cqh

Go back to Magnesium Binding Sites List in 8cqh
Magnesium binding site 1 out of 1 in the Ntaya Virus Methyltransferase in Complex with Gtp and Sah


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ntaya Virus Methyltransferase in Complex with Gtp and Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:13.5
occ:1.00
O1G A:GTP302 2.0 11.8 1.0
O1A A:GTP302 2.1 9.9 1.0
O A:HOH588 2.1 8.9 1.0
O2B A:GTP302 2.2 12.1 1.0
O A:HOH543 2.2 13.1 1.0
O A:HOH615 2.3 7.9 1.0
PB A:GTP302 3.1 13.3 1.0
PG A:GTP302 3.2 11.7 1.0
PA A:GTP302 3.3 7.6 1.0
O3B A:GTP302 3.5 10.9 1.0
O3A A:GTP302 3.6 9.4 1.0
NH1 A:ARG28 3.9 5.5 1.0
O2G A:GTP302 4.0 11.9 1.0
O A:HOH653 4.2 23.3 1.0
O A:HOH510 4.2 25.1 1.0
O2A A:GTP302 4.4 8.1 1.0
O3G A:GTP302 4.4 12.1 1.0
O5' A:GTP302 4.4 8.5 1.0
O1B A:GTP302 4.5 12.9 1.0
O A:HOH439 4.6 26.5 1.0
O A:HOH450 4.7 7.4 1.0
CE2 A:PHE24 4.7 9.4 1.0
N7 A:GTP302 4.8 12.6 1.0
O A:HOH581 4.8 17.4 1.0
C8 A:GTP302 4.9 12.0 1.0

Reference:

K.Krejcova, E.Boura. Ntaya Virus Methyltransferase in Complex with Gtp and Sah To Be Published.
Page generated: Thu Oct 3 22:51:35 2024

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