Magnesium in PDB 8d9s: Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1

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>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Magnesium atom in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 (pdb code 8d9s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 18 binding sites of Magnesium where determined in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1, PDB code: 8d9s:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:57.5 occ:1.00 O1G C:GTP1001 2.1 83.0 1.0 CA C:THR31 3.1 69.2 1.0 O3A C:GTP1001 3.3 83.0 1.0 PG C:GTP1001 3.5 83.0 1.0 N C:THR31 3.5 69.2 1.0 O2A C:GTP1001 3.5 83.0 1.0 O1B C:GTP1001 3.5 83.0 1.0 PA C:GTP1001 3.8 83.0 1.0 PB C:GTP1001 3.8 83.0 1.0 O3B C:GTP1001 4.0 83.0 1.0 O1A C:GTP1001 4.1 83.0 1.0 O3G C:GTP1001 4.1 83.0 1.0 C C:THR31 4.4 69.2 1.0 O2G C:GTP1001 4.5 83.0 1.0 C C:LYS30 4.6 68.9 1.0 N C:THR48 5.0 55.9 1.0

Magnesium binding site 2 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1002 b:57.5 occ:1.00 O1G H:GTP1001 2.1 83.0 1.0 CA H:THR31 3.1 69.2 1.0 O3A H:GTP1001 3.3 83.0 1.0 PG H:GTP1001 3.5 83.0 1.0 N H:THR31 3.5 69.2 1.0 O2A H:GTP1001 3.5 83.0 1.0 O1B H:GTP1001 3.5 83.0 1.0 PA H:GTP1001 3.8 83.0 1.0 PB H:GTP1001 3.8 83.0 1.0 O3B H:GTP1001 4.0 83.0 1.0 O1A H:GTP1001 4.1 83.0 1.0 O3G H:GTP1001 4.1 83.0 1.0 C H:THR31 4.4 69.2 1.0 O2G H:GTP1001 4.5 83.0 1.0 C H:LYS30 4.6 68.9 1.0 N H:THR48 5.0 55.9 1.0

Magnesium binding site 3 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ Z:Mg1002 b:57.5 occ:1.00 O1G Z:GTP1001 2.1 83.0 1.0 CA Z:THR31 3.1 69.2 1.0 O3A Z:GTP1001 3.3 83.0 1.0 PG Z:GTP1001 3.5 83.0 1.0 N Z:THR31 3.5 69.2 1.0 O2A Z:GTP1001 3.5 83.0 1.0 O1B Z:GTP1001 3.5 83.0 1.0 PA Z:GTP1001 3.8 83.0 1.0 PB Z:GTP1001 3.8 83.0 1.0 O3B Z:GTP1001 4.0 83.0 1.0 O1A Z:GTP1001 4.1 83.0 1.0 O3G Z:GTP1001 4.1 83.0 1.0 C Z:THR31 4.4 69.2 1.0 O2G Z:GTP1001 4.5 83.0 1.0 C Z:LYS30 4.6 68.9 1.0 N Z:THR48 5.0 55.9 1.0

Magnesium binding site 4 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg1002 b:57.5 occ:1.00 O1G J:GTP1001 2.1 83.0 1.0 CA J:THR31 3.1 69.2 1.0 O3A J:GTP1001 3.3 83.0 1.0 PG J:GTP1001 3.5 83.0 1.0 N J:THR31 3.5 69.2 1.0 O2A J:GTP1001 3.5 83.0 1.0 O1B J:GTP1001 3.5 83.0 1.0 PA J:GTP1001 3.8 83.0 1.0 PB J:GTP1001 3.8 83.0 1.0 O3B J:GTP1001 4.0 83.0 1.0 O1A J:GTP1001 4.1 83.0 1.0 O3G J:GTP1001 4.1 83.0 1.0 C J:THR31 4.4 69.2 1.0 O2G J:GTP1001 4.5 83.0 1.0 C J:LYS30 4.6 68.9 1.0 N J:THR48 5.0 55.9 1.0

Magnesium binding site 5 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg1002 b:57.5 occ:1.00 O1G X:GTP1001 2.1 83.0 1.0 CA X:THR31 3.1 69.2 1.0 O3A X:GTP1001 3.3 83.0 1.0 N X:THR31 3.5 69.2 1.0 PG X:GTP1001 3.5 83.0 1.0 O2A X:GTP1001 3.5 83.0 1.0 O1B X:GTP1001 3.5 83.0 1.0 PA X:GTP1001 3.8 83.0 1.0 PB X:GTP1001 3.8 83.0 1.0 O3B X:GTP1001 4.0 83.0 1.0 O1A X:GTP1001 4.1 83.0 1.0 O3G X:GTP1001 4.1 83.0 1.0 C X:THR31 4.4 69.2 1.0 O2G X:GTP1001 4.5 83.0 1.0 C X:LYS30 4.6 68.9 1.0 N X:THR48 5.0 55.9 1.0

Magnesium binding site 6 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ 3:Mg1002 b:57.5 occ:1.00 O1G 3:GTP1001 2.1 83.0 1.0 CA 3:THR31 3.1 69.2 1.0 O3A 3:GTP1001 3.3 83.0 1.0 PG 3:GTP1001 3.5 83.0 1.0 N 3:THR31 3.5 69.2 1.0 O2A 3:GTP1001 3.5 83.0 1.0 O1B 3:GTP1001 3.5 83.0 1.0 PA 3:GTP1001 3.8 83.0 1.0 PB 3:GTP1001 3.8 83.0 1.0 O3B 3:GTP1001 4.0 83.0 1.0 O1A 3:GTP1001 4.1 83.0 1.0 O3G 3:GTP1001 4.1 83.0 1.0 C 3:THR31 4.4 69.2 1.0 O2G 3:GTP1001 4.5 83.0 1.0 C 3:LYS30 4.6 68.9 1.0 N 3:THR48 5.0 55.9 1.0

Magnesium binding site 7 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg1002 b:57.5 occ:1.00 O1G K:GTP1001 2.1 83.0 1.0 CA K:THR31 3.1 69.2 1.0 O3A K:GTP1001 3.3 83.0 1.0 PG K:GTP1001 3.5 83.0 1.0 N K:THR31 3.5 69.2 1.0 O2A K:GTP1001 3.5 83.0 1.0 O1B K:GTP1001 3.5 83.0 1.0 PA K:GTP1001 3.8 83.0 1.0 PB K:GTP1001 3.8 83.0 1.0 O3B K:GTP1001 4.0 83.0 1.0 O1A K:GTP1001 4.1 83.0 1.0 O3G K:GTP1001 4.1 83.0 1.0 C K:THR31 4.4 69.2 1.0 O2G K:GTP1001 4.5 83.0 1.0 C K:LYS30 4.6 68.9 1.0 N K:THR48 5.0 55.9 1.0

Magnesium binding site 8 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1002 b:57.5 occ:1.00 O1G a:GTP1001 2.1 83.0 1.0 CA a:THR31 3.1 69.2 1.0 O3A a:GTP1001 3.3 83.0 1.0 N a:THR31 3.5 69.2 1.0 PG a:GTP1001 3.5 83.0 1.0 O2A a:GTP1001 3.5 83.0 1.0 O1B a:GTP1001 3.5 83.0 1.0 PA a:GTP1001 3.8 83.0 1.0 PB a:GTP1001 3.8 83.0 1.0 O3B a:GTP1001 4.0 83.0 1.0 O1A a:GTP1001 4.1 83.0 1.0 O3G a:GTP1001 4.1 83.0 1.0 C a:THR31 4.4 69.2 1.0 O2G a:GTP1001 4.5 83.0 1.0 C a:LYS30 4.6 68.9 1.0 N a:THR48 5.0 55.9 1.0

Magnesium binding site 9 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ 4:Mg1002 b:57.5 occ:1.00 O1G 4:GTP1001 2.1 83.0 1.0 CA 4:THR31 3.1 69.2 1.0 O3A 4:GTP1001 3.3 83.0 1.0 N 4:THR31 3.5 69.2 1.0 PG 4:GTP1001 3.5 83.0 1.0 O2A 4:GTP1001 3.5 83.0 1.0 O1B 4:GTP1001 3.5 83.0 1.0 PA 4:GTP1001 3.8 83.0 1.0 PB 4:GTP1001 3.8 83.0 1.0 O3B 4:GTP1001 4.0 83.0 1.0 O1A 4:GTP1001 4.1 83.0 1.0 O3G 4:GTP1001 4.1 83.0 1.0 C 4:THR31 4.4 69.2 1.0 O2G 4:GTP1001 4.5 83.0 1.0 C 4:LYS30 4.6 68.9 1.0 N 4:THR48 5.0 55.9 1.0

Magnesium binding site 10 out of 18 in the Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Ap-1, ARF1, Nef Lattice on Mhc-I Lipopeptide Incorporated Wide Membrane Tubes, Centered on Beta-ARF1 within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg1002 b:57.5 occ:1.00 O1G O:GTP1001 2.1 83.0 1.0 CA O:THR31 3.1 69.2 1.0 O3A O:GTP1001 3.3 83.0 1.0 N O:THR31 3.5 69.2 1.0 PG O:GTP1001 3.5 83.0 1.0 O2A O:GTP1001 3.5 83.0 1.0 O1B O:GTP1001 3.5 83.0 1.0 PA O:GTP1001 3.8 83.0 1.0 PB O:GTP1001 3.8 83.0 1.0 O3B O:GTP1001 4.0 83.0 1.0 O1A O:GTP1001 4.1 83.0 1.0 O3G O:GTP1001 4.1 83.0 1.0 C O:THR31 4.4 69.2 1.0 O2G O:GTP1001 4.5 83.0 1.0 C O:LYS30 4.6 68.9 1.0 N O:THR48 5.0 55.9 1.0

R.M.Hooy, Y.Iwamoto, D.A.Tudorica, X.Ren, J.H.Hurley. Self-Assembly and Structure of A Clathrin-Independent Ap-1:ARF1 Tubular Membrane Coat. Sci Adv V. 8 D3914 2022.
ISSN: ESSN 2375-2548
PubMed: 36269825
DOI: 10.1126/SCIADV.ADD3914