Magnesium in PDB 8dh6: Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs

Enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs

All present enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs:
7.1.1.9;

Other elements in 8dh6:

The structure of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Zinc (Zn) 1 atom
Copper (Cu) 2 atoms
Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs (pdb code 8dh6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs, PDB code: 8dh6:

Magnesium binding site 1 out of 1 in 8dh6

Go back to Magnesium Binding Sites List in 8dh6
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg602

b:58.0
occ:1.00
OE1 b:GLU223 2.2 60.5 1.0
NE2 a:HIS368 2.2 56.1 1.0
CD2 a:HIS368 3.1 56.1 1.0
CD b:GLU223 3.2 60.5 1.0
CE1 a:HIS368 3.2 56.1 1.0
OE2 b:GLU223 3.6 60.5 1.0
O b:SER222 4.1 61.1 1.0
OD2 a:ASP369 4.2 56.8 1.0
CG a:HIS368 4.3 56.1 1.0
ND1 a:HIS368 4.3 56.1 1.0
CB a:ASP369 4.5 56.8 1.0
CG a:ASP369 4.5 56.8 1.0
CG b:GLU223 4.5 60.5 1.0
OD2 b:ASP187 4.6 60.6 1.0
CB b:GLU223 4.9 60.5 1.0
CE2 a:TYR130 5.0 58.9 1.0

Reference:

A.S.Godoy, Y.Song, H.Cheruvara, A.Quigley, G.Oliva. Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs To Be Published.
Page generated: Fri Oct 4 00:42:38 2024

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