Magnesium in PDB 8dk2: Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetabc in An Unclamped State Trapped in Atp Dependent Dimeric Form

The binding sites of Magnesium atom in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetabc in An Unclamped State Trapped in Atp Dependent Dimeric Form (pdb code 8dk2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetabc in An Unclamped State Trapped in Atp Dependent Dimeric Form, PDB code: 8dk2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetabc in An Unclamped State Trapped in Atp Dependent Dimeric Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetabc in An Unclamped State Trapped in Atp Dependent Dimeric Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1202 b:114.4 occ:1.00 N C:ALA69 2.0 107.1 1.0 N C:SER70 2.1 107.8 1.0 O C:ASN67 2.1 107.4 1.0 C C:LEU68 2.2 104.9 1.0 C C:ASN67 2.2 107.4 1.0 N C:LEU68 2.5 104.9 1.0 CA C:LEU68 2.8 104.9 1.0 OD1 C:ASN67 2.8 107.4 1.0 C C:ALA69 2.9 107.1 1.0 O C:LEU68 2.9 104.9 1.0 CA C:ALA69 2.9 107.1 1.0 CA C:ASN67 3.2 107.4 1.0 CA C:SER70 3.2 107.8 1.0 CB C:SER70 3.3 107.8 1.0 CG C:ASN67 3.6 107.4 1.0 CB C:ALA69 3.7 107.1 1.0 CB C:ASN67 3.9 107.4 1.0 O C:ALA69 4.1 107.1 1.0 N C:THR71 4.1 113.2 1.0 CB C:LEU68 4.1 104.9 1.0 C C:SER70 4.2 107.8 1.0 N C:ASN67 4.4 107.4 1.0 ND2 C:ASN67 4.6 107.4 1.0 OG C:SER70 4.7 107.8 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetabc in An Unclamped State Trapped in Atp Dependent Dimeric Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetabc in An Unclamped State Trapped in Atp Dependent Dimeric Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1202 b:119.4 occ:1.00 NH2 D:ARG78 2.0 100.3 1.0 NE D:ARG78 2.0 100.3 1.0 ND2 D:ASN67 2.1 102.4 1.0 CZ D:ARG78 2.2 100.3 1.0 CG D:ASN67 2.3 102.4 1.0 CB D:ASN67 2.4 102.4 1.0 OD1 D:ASN67 3.1 102.4 1.0 CD D:ARG78 3.3 100.3 1.0 NH1 D:ARG78 3.4 100.3 1.0 CG D:ARG78 3.7 100.3 1.0 CA D:ASN67 3.7 102.4 1.0 O C:GLY984 4.3 111.6 1.0 OH D:TYR83 4.4 100.1 1.0 N D:ASN67 4.4 102.4 1.0 O2A D:AGS1201 4.6 96.0 1.0 C D:ASN67 4.9 102.4 1.0 CB D:ARG78 4.9 100.3 1.0 CG2 D:THR50 4.9 93.6 1.0 O D:ASN67 5.0 102.4 1.0

A.Deep, Y.Gu, Y.Q.Gao, K.M.Ego, M.A.Herzik Jr., H.Zhou, K.D.Corbett. The Smc-Family Wadjet Complex Protects Bacteria From Plasmid Transformation By Recognition and Cleavage of Closed-Circular Dna. Mol.Cell V. 82 4145 2022.
ISSN: ISSN 1097-2765
PubMed: 36206765
DOI: 10.1016/J.MOLCEL.2022.09.008