Magnesium in PDB 8dk3: Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetc Atpase Domain Bound to Dna and Cwhd Domain of Jeta

The binding sites of Magnesium atom in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetc Atpase Domain Bound to Dna and Cwhd Domain of Jeta (pdb code 8dk3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetc Atpase Domain Bound to Dna and Cwhd Domain of Jeta, PDB code: 8dk3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetc Atpase Domain Bound to Dna and Cwhd Domain of Jeta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetc Atpase Domain Bound to Dna and Cwhd Domain of Jeta within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:110.0 occ:1.00 O2B A:AGS1201 1.9 135.5 1.0 OG1 A:THR50 2.0 117.5 1.0 O2G A:AGS1201 2.4 129.9 1.0 CB A:THR50 3.3 109.5 1.0 PB A:AGS1201 3.5 126.9 1.0 PG A:AGS1201 3.8 128.9 1.0 CG2 A:THR50 3.8 110.9 1.0 O3B A:AGS1201 4.1 125.4 1.0 O3A A:AGS1201 4.2 132.1 1.0 O1B A:AGS1201 4.3 120.8 1.0 CA A:THR50 4.4 102.4 1.0 OD2 A:ASP1021 4.4 151.7 1.0 N A:THR50 4.4 107.3 1.0 O3G A:AGS1201 4.5 121.5 1.0 OD1 A:ASP1021 4.7 148.5 1.0 OD1 A:ASN67 4.7 122.0 1.0 N B:GLY986 4.8 117.9 1.0 CG A:ASP1021 5.0 149.6 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetc Atpase Domain Bound to Dna and Cwhd Domain of Jeta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Pseudomonas Aeruginosa PA14 Jetc Atpase Domain Bound to Dna and Cwhd Domain of Jeta within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1202 b:101.8 occ:1.00 OG1 B:THR50 1.9 110.3 1.0 S1G B:AGS1201 2.3 137.0 1.0 O2B B:AGS1201 2.7 129.8 1.0 CB B:THR50 3.2 106.7 1.0 CG2 B:THR50 3.6 108.7 1.0 PG B:AGS1201 4.0 126.0 1.0 PB B:AGS1201 4.0 123.9 1.0 O3A B:AGS1201 4.1 130.4 1.0 OD2 B:ASP1021 4.1 147.3 1.0 CA B:THR50 4.2 100.0 1.0 N B:THR50 4.4 104.8 1.0 O2G B:AGS1201 4.4 130.7 1.0 O3B B:AGS1201 4.4 125.7 1.0 OD1 B:ASP1021 4.5 141.1 1.0 OD1 B:ASN67 4.7 124.7 1.0 CG B:ASP1021 4.7 142.6 1.0 N A:GLY986 4.8 126.6 1.0

A.Deep, Y.Gu, Y.Q.Gao, K.M.Ego, M.A.Herzik Jr., H.Zhou, K.D.Corbett. The Smc-Family Wadjet Complex Protects Bacteria From Plasmid Transformation By Recognition and Cleavage of Closed-Circular Dna. Mol.Cell V. 82 4145 2022.
ISSN: ISSN 1097-2765
PubMed: 36206765
DOI: 10.1016/J.MOLCEL.2022.09.008