Magnesium in PDB 8dkt: Crystal Structure of SEPTIN1 - SEPTIN2 Heterocomplex From Drosophila Melanogaster

The structure of Crystal Structure of SEPTIN1 - SEPTIN2 Heterocomplex From Drosophila Melanogaster, PDB code: 8dkt was solved by A.F.De Freitas, D.A.Leonardo, I.A.Cavini, H.M.Pereira, R.C.Garratt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.56 / 2.38
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	73.577, 149.423, 155.34, 90, 90, 90
R / Rfree (%)	21.7 / 25.5

The binding sites of Magnesium atom in the Crystal Structure of SEPTIN1 - SEPTIN2 Heterocomplex From Drosophila Melanogaster (pdb code 8dkt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of SEPTIN1 - SEPTIN2 Heterocomplex From Drosophila Melanogaster, PDB code: 8dkt:

Magnesium binding site 1 out of 1 in the Crystal Structure of SEPTIN1 - SEPTIN2 Heterocomplex From Drosophila Melanogaster


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of SEPTIN1 - SEPTIN2 Heterocomplex From Drosophila Melanogaster within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:50.3 occ:1.00 OG B:SER57 2.0 68.9 1.0 O1B B:GTP401 2.2 48.2 1.0 O1G B:GTP401 2.7 58.0 1.0 O B:HOH502 2.7 51.5 1.0 CB B:SER57 2.8 67.8 1.0 O3G B:GTP401 3.3 60.1 1.0 O1A B:GTP401 3.3 58.2 1.0 PG B:GTP401 3.5 55.8 1.0 PB B:GTP401 3.6 49.1 1.0 OG B:SER70 3.6 105.5 1.0 O3B B:GTP401 4.0 47.1 1.0 N B:SER57 4.0 66.3 1.0 CA B:SER57 4.0 70.7 1.0 O B:THR71 4.1 60.1 1.0 PA B:GTP401 4.2 42.6 1.0 O3A B:GTP401 4.3 48.5 1.0 CB B:SER70 4.5 91.8 1.0 O2A B:GTP401 4.6 58.2 1.0 OD2 B:ASP102 4.6 85.5 1.0 O2B B:GTP401 4.6 62.0 1.0 CA B:SER70 4.8 75.5 1.0 C B:THR71 4.8 61.4 1.0 O2G B:GTP401 4.8 52.7 1.0 C B:SER70 4.9 69.4 1.0 CA B:PRO72 5.0 48.0 1.0

A.De Freitas Fernandes, D.A.Leonardo, I.A.Cavini, H.V.D.Rosa, J.A.Vargas, H.D'muniz Pereira, A.S.Nascimento, R.C.Garratt. Conservation and Divergence of the G-Interfaces of Drosophila Melanogaster Septins. Cytoskeleton (Hoboken) 2022.
ISSN: ESSN 1949-3592
PubMed: 36576069
DOI: 10.1002/CM.21740