Magnesium in PDB 8du1: Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis

All present enzymatic activity of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis:
4.2.1.46;

The structure of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis, PDB code: 8du1 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.80 / 1.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.74, 84.62, 130.87, 90, 101.18, 90
R / Rfree (%)	15.6 / 19.5

The structure of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Magnesium atom in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis (pdb code 8du1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis, PDB code: 8du1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:31.8 occ:1.00 O C:HOH718 2.0 32.8 1.0 OG1 C:THR310 2.1 27.0 1.0 O C:HOH635 2.1 24.8 1.0 O C:HOH555 2.1 28.5 1.0 CB C:THR310 3.1 26.4 1.0 CG2 C:THR310 4.0 27.4 1.0 OD1 C:ASP308 4.0 24.9 1.0 CA C:THR310 4.2 24.6 1.0 C C:THR310 4.2 22.6 1.0 N C:LYS311 4.2 22.0 1.0 OD2 C:ASP308 4.3 31.4 1.0 O C:HOH722 4.3 29.4 1.0 O C:HOH622 4.3 22.4 1.0 O C:HOH712 4.4 26.6 0.5 CG C:ASP308 4.5 27.9 1.0 N C:THR310 4.8 21.4 1.0 O C:THR310 4.8 23.1 1.0 O C:HOH736 4.9 29.4 1.0 CA C:LYS311 5.0 23.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:49.7 occ:1.00 O D:HOH679 2.1 46.2 1.0 O D:HOH507 2.1 39.2 1.0 O D:HOH801 2.3 45.1 1.0 O D:HOH783 2.3 42.9 1.0 O D:HOH578 2.5 33.4 1.0 O D:ASN50 3.9 24.0 1.0 O D:HOH687 4.1 40.5 1.0 CA D:ASN50 4.2 21.9 1.0 C D:ASN50 4.3 23.5 1.0 O D:PHE51 4.4 21.8 1.0 O D:HOH676 4.4 42.3 1.0 O D:GLU49 4.5 26.4 1.0 OD1 D:ASN50 4.7 37.1 1.0 CB D:ASN50 4.9 29.5 1.0 C D:PHE51 5.0 24.1 1.0

N.D.Debouver, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis To Be Published.