Magnesium in PDB 8e1f: Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form

The structure of Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form, PDB code: 8e1f was solved by E.Wilson, S.Nawarathnage, E.Stewart, S.Brown, B.Bezzant, D.Bunn, N.Towne, M.J.Pedroza Romo, J.D.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.69 / 2.16
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	61.954, 61.954, 167.574, 90, 90, 120
R / Rfree (%)	19.8 / 22.9

The structure of Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Magnesium atom in the Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form (pdb code 8e1f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form, PDB code: 8e1f:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:71.0 occ:1.00 O1 A:SO4202 3.7 52.5 1.0 O A:TYR28 3.9 36.0 1.0 O A:HOH314 4.1 28.9 1.0 HA A:SER30 4.1 44.1 1.0 HA A:TYR28 4.1 39.0 1.0 HD22 A:ASN58 4.4 38.2 1.0 C A:TYR28 4.4 30.4 1.0 O A:TRP29 4.4 26.7 1.0 C A:TRP29 4.7 31.4 1.0 HB2 A:ASN58 4.8 43.4 1.0 CA A:TYR28 4.8 32.4 1.0 CA A:SER30 4.9 36.6 1.0 HB3 A:SER30 4.9 39.3 1.0 N A:SER30 4.9 33.8 1.0 O A:HOH317 5.0 51.9 1.0

Magnesium binding site 2 out of 5 in the Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg204 b:52.1 occ:1.00 H A:ASP32 2.7 33.2 0.5 H A:ASP32 2.7 33.2 0.5 HB2 A:SER30 2.8 39.3 1.0 CG A:ASP32 3.1 59.9 1.0 O4 A:SO4202 3.2 59.0 1.0 OD2 A:ASP32 3.2 60.5 1.0 HB2 A:ASP32 3.3 47.2 1.0 OD1 A:ASP32 3.3 57.7 1.0 N A:ASP32 3.4 27.6 1.0 H A:ARG31 3.4 35.8 1.0 HG A:SER30 3.5 49.4 1.0 CB A:ASP32 3.6 39.2 1.0 CB A:SER30 3.7 32.6 1.0 OG A:SER30 3.9 41.1 1.0 N A:ARG31 3.9 29.8 1.0 CA A:ASP32 4.1 38.8 1.0 HB3 A:SER30 4.2 39.3 1.0 CB A:ARG31 4.3 38.9 1.0 O2 A:SO4202 4.3 60.8 1.0 C A:ARG31 4.3 31.4 1.0 S A:SO4202 4.3 51.8 1.0 CA A:ARG31 4.4 37.3 1.0 HB3 A:ASP32 4.5 47.2 1.0 HA A:ASP32 4.6 46.7 1.0 C A:SER30 4.6 33.6 1.0 CA A:SER30 4.7 36.6 1.0 HA A:SER30 4.8 44.1 1.0 H A:ASP33 4.9 35.3 1.0

Magnesium binding site 3 out of 5 in the Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg203 b:73.2 occ:1.00 O B:TYR28 3.8 35.3 1.0 HA B:TYR28 4.0 40.9 1.0 O B:HOH313 4.3 28.6 1.0 O B:HOH331 4.3 51.3 1.0 HA B:SER30 4.3 41.0 1.0 C B:TYR28 4.4 29.3 1.0 O B:TRP29 4.6 29.0 1.0 CA B:TYR28 4.7 34.0 1.0 C B:TRP29 4.9 29.8 1.0 HD22 B:ASN58 5.0 51.5 1.0 HD1 B:TYR28 5.0 44.0 1.0

Magnesium binding site 4 out of 5 in the Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg201 b:66.4 occ:1.00 OE1 D:GLU80 2.5 61.5 1.0 HB2 D:ASP79 2.6 62.2 1.0 H D:ASP79 2.8 52.6 1.0 O D:HIS76 3.2 54.6 1.0 O D:HOH338 3.2 61.3 1.0 HA D:SER77 3.3 59.7 1.0 H D:GLU80 3.4 60.9 1.0 CB D:ASP79 3.5 51.7 1.0 CD D:GLU80 3.5 68.0 1.0 C D:HIS76 3.5 49.4 1.0 N D:ASP79 3.5 44.3 1.0 N D:SER77 3.7 50.3 1.0 CA D:SER77 3.7 49.7 1.0 OD2 D:ASP79 3.7 64.5 1.0 H D:GLY78 3.8 53.2 1.0 C D:SER77 3.8 48.0 1.0 N D:GLY78 3.8 44.3 1.0 OE2 D:GLU80 3.8 69.6 1.0 CG D:ASP79 3.9 60.1 1.0 O D:PRO75 4.0 46.7 1.0 CA D:ASP79 4.0 45.8 1.0 HB3 D:ASP79 4.2 62.2 1.0 HA D:HIS76 4.2 65.5 1.0 N D:GLU80 4.2 50.7 1.0 H D:SER77 4.3 60.5 1.0 O D:SER77 4.3 48.3 1.0 CA D:HIS76 4.4 54.5 1.0 C D:GLY78 4.5 48.5 1.0 C D:ASP79 4.6 44.5 1.0 CA D:GLY78 4.7 40.0 1.0 C D:PRO75 4.7 48.8 1.0 CG D:GLU80 4.8 61.3 1.0 HB2 D:GLU80 4.8 57.3 1.0 HG2 D:ARG71 4.8 67.1 1.0 HA D:ASP79 4.9 54.4 1.0 N D:HIS76 4.9 53.6 1.0 HG3 D:GLU80 4.9 73.7 1.0 MG D:MG202 5.0 69.8 1.0 OD1 D:ASP79 5.0 58.7 1.0 HA3 D:GLY78 5.0 47.6 1.0

Magnesium binding site 5 out of 5 in the Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non- Polymer Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg202 b:69.8 occ:1.00 H D:SER48 2.7 77.9 1.0 OE2 D:GLU80 2.7 69.6 1.0 O D:HIS76 2.8 54.6 1.0 HA D:SER77 3.0 59.7 1.0 OG D:SER77 3.3 62.5 1.0 HA D:LEU47 3.3 72.3 1.0 CD D:GLU80 3.4 68.0 1.0 HD22 D:LEU47 3.5 65.0 1.0 N D:SER48 3.5 64.8 1.0 HB3 D:LEU47 3.6 57.5 1.0 OG D:SER48 3.6 67.7 1.0 HG D:SER77 3.7 75.2 1.0 C D:HIS76 3.7 49.4 1.0 CA D:SER77 3.8 49.7 1.0 HB2 D:SER48 3.8 80.1 1.0 OE1 D:GLU80 3.8 61.5 1.0 HB3 D:SER77 3.8 51.8 1.0 CB D:SER77 3.8 43.1 1.0 HG D:SER48 3.9 81.3 1.0 CA D:LEU47 4.0 60.1 1.0 CB D:SER48 4.1 66.7 1.0 HG2 D:GLU80 4.1 73.7 1.0 N D:SER77 4.2 50.3 1.0 CB D:LEU47 4.3 47.8 1.0 HD23 D:LEU47 4.3 65.0 1.0 C D:LEU47 4.3 64.8 1.0 CD2 D:LEU47 4.3 54.1 1.0 CG D:GLU80 4.3 61.3 1.0 CA D:SER48 4.4 68.8 1.0 HB3 D:HIS76 4.4 81.8 1.0 HB2 D:GLU80 4.5 57.3 1.0 HB2 D:SER77 4.8 51.8 1.0 CG D:LEU47 4.9 52.1 1.0 CA D:HIS76 4.9 54.5 1.0 MG D:MG201 5.0 66.4 1.0 HA D:SER48 5.0 82.7 1.0 CB D:GLU80 5.0 47.7 1.0 HD21 D:LEU47 5.0 65.0 1.0

E.Wilson, S.Nawarathnage, E.Stewart, S.Brown, B.Bezzant, D.Bunn, N.Towne, M.J.Pedroza Romo, J.D.Moody. Sterile Alpha Motif Domain of Human Translocation Ets Leukemia, Non-Polymer Crystal Form To Be Published.