Magnesium in PDB 8ea3: V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration (pdb code 8ea3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration, PDB code: 8ea3:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:20.0 occ:1.00 OG1 A:THR67 1.4 49.0 1.0 O2B A:ATP302 2.1 20.0 1.0 CB A:THR67 2.6 49.0 1.0 O1G A:ATP302 3.0 20.0 1.0 O1A A:ATP302 3.3 20.0 1.0 PB A:ATP302 3.4 20.0 1.0 CG2 A:THR67 3.5 49.0 1.0 OD2 A:ASP144 3.5 49.0 1.0 O3B A:ATP302 3.7 20.0 1.0 PG A:ATP302 3.7 20.0 1.0 CA A:THR67 3.7 49.0 1.0 O2G A:ATP302 3.9 20.0 1.0 N A:THR67 3.9 49.0 1.0 OD1 A:ASP144 4.0 49.0 1.0 CG A:ASP144 4.2 49.0 1.0 O3A A:ATP302 4.3 20.0 1.0 PA A:ATP302 4.3 20.0 1.0 O1B A:ATP302 4.5 20.0 1.0 O2A A:ATP302 4.9 20.0 1.0

Magnesium binding site 2 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:20.0 occ:1.00 OG1 B:THR67 1.5 49.0 1.0 O1G B:ATP302 1.9 20.0 1.0 O2B B:ATP302 2.2 20.0 1.0 CB B:THR67 2.7 49.0 1.0 PG B:ATP302 3.1 20.0 1.0 PB B:ATP302 3.4 20.0 1.0 O3B B:ATP302 3.5 20.0 1.0 O1A B:ATP302 3.5 20.0 1.0 O2G B:ATP302 3.6 20.0 1.0 CG2 B:THR67 3.6 49.0 1.0 OD1 B:ASP144 3.7 49.0 1.0 CA B:THR67 3.7 49.0 1.0 N B:THR67 3.8 49.0 1.0 OD2 B:ASP144 3.9 49.0 1.0 NH2 A:ARG189 4.1 49.0 1.0 CG B:ASP144 4.2 49.0 1.0 O3G B:ATP302 4.4 20.0 1.0 O3A B:ATP302 4.5 20.0 1.0 O1B B:ATP302 4.5 20.0 1.0 PA B:ATP302 4.6 20.0 1.0 OE2 B:GLU145 4.9 49.0 1.0 C B:LYS66 5.0 49.0 1.0

Magnesium binding site 3 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:20.0 occ:1.00 OG1 C:THR67 1.5 49.0 1.0 O3G C:ATP302 2.4 20.0 1.0 OD2 C:ASP144 2.8 49.0 1.0 CB C:THR67 2.9 49.0 1.0 OD1 C:ASP144 3.3 49.0 1.0 CG C:ASP144 3.4 49.0 1.0 O2B C:ATP302 3.4 20.0 1.0 CA C:THR67 3.7 49.0 1.0 CG2 C:THR67 3.7 49.0 1.0 N C:THR67 3.8 49.0 1.0 PG C:ATP302 3.9 20.0 1.0 O1A C:ATP302 4.4 20.0 1.0 O3B C:ATP302 4.5 20.0 1.0 PB C:ATP302 4.6 20.0 1.0 O2G C:ATP302 4.6 20.0 1.0 OH C:TYR93 4.8 49.0 1.0 O1G C:ATP302 4.9 20.0 1.0 CB C:ASP144 4.9 49.0 1.0 C C:LYS66 4.9 49.0 1.0

Magnesium binding site 4 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:20.0 occ:1.00 OG1 D:THR67 1.8 49.0 1.0 O1G D:ATP302 2.3 20.0 1.0 O2B D:ATP302 2.5 20.0 1.0 CB D:THR67 3.1 49.0 1.0 OD2 D:ASP144 3.5 49.0 1.0 PG D:ATP302 3.5 20.0 1.0 PB D:ATP302 3.7 20.0 1.0 OD1 D:ASP144 3.8 49.0 1.0 CG2 D:THR67 3.9 49.0 1.0 O3B D:ATP302 3.9 20.0 1.0 O2G D:ATP302 3.9 20.0 1.0 O1A D:ATP302 4.0 20.0 1.0 N D:THR67 4.0 49.0 1.0 CG D:ASP144 4.0 49.0 1.0 CA D:THR67 4.1 49.0 1.0 O1B D:ATP302 4.6 20.0 1.0 NH2 C:ARG189 4.6 49.0 1.0 O3G D:ATP302 4.8 20.0 1.0 O3A D:ATP302 4.9 20.0 1.0

Magnesium binding site 5 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg301 b:20.0 occ:1.00 OG1 E:THR67 1.6 49.0 1.0 O1G E:ATP302 2.0 20.0 1.0 O2B E:ATP302 2.6 20.0 1.0 CB E:THR67 3.0 49.0 1.0 PG E:ATP302 3.4 20.0 1.0 OD2 E:ASP144 3.5 49.0 1.0 CG2 E:THR67 3.6 49.0 1.0 PB E:ATP302 3.8 20.0 1.0 OD1 E:ASP144 3.9 49.0 1.0 CA E:THR67 3.9 49.0 1.0 O3B E:ATP302 3.9 20.0 1.0 N E:THR67 4.0 49.0 1.0 O2G E:ATP302 4.1 20.0 1.0 CG E:ASP144 4.1 49.0 1.0 O3G E:ATP302 4.5 20.0 1.0 O1B E:ATP302 4.6 20.0 1.0 O1A E:ATP302 4.6 20.0 1.0 O3A E:ATP302 4.9 20.0 1.0 O2A E:ATP302 5.0 20.0 1.0

Magnesium binding site 6 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg301 b:20.0 occ:1.00 OG1 F:THR67 1.4 49.0 1.0 O1G F:ATP302 1.6 20.0 1.0 O2B F:ATP302 2.6 20.0 1.0 CB F:THR67 2.8 49.0 1.0 PG F:ATP302 3.0 20.0 1.0 O1A F:ATP302 3.5 20.0 1.0 O3B F:ATP302 3.5 20.0 1.0 CG2 F:THR67 3.6 49.0 1.0 O2G F:ATP302 3.6 20.0 1.0 PB F:ATP302 3.7 20.0 1.0 OD2 F:ASP144 3.7 49.0 1.0 N F:THR67 3.7 49.0 1.0 CA F:THR67 3.7 49.0 1.0 OD1 F:ASP144 4.0 49.0 1.0 O3G F:ATP302 4.2 20.0 1.0 CG F:ASP144 4.3 49.0 1.0 PA F:ATP302 4.7 20.0 1.0 O3A F:ATP302 4.7 20.0 1.0 O1B F:ATP302 4.7 20.0 1.0 C F:LYS66 4.7 49.0 1.0 NH2 E:ARG189 4.9 49.0 1.0

Magnesium binding site 7 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg301 b:20.0 occ:1.00 OG1 G:THR67 1.4 49.0 1.0 O1G G:ATP302 1.8 20.0 1.0 CB G:THR67 2.6 49.0 1.0 O2B G:ATP302 2.7 20.0 1.0 PG G:ATP302 3.2 20.0 1.0 CG2 G:THR67 3.5 49.0 1.0 CA G:THR67 3.6 49.0 1.0 OD2 G:ASP144 3.7 49.0 1.0 N G:THR67 3.7 49.0 1.0 O3B G:ATP302 3.7 20.0 1.0 PB G:ATP302 3.8 20.0 1.0 O2G G:ATP302 3.9 20.0 1.0 O1A G:ATP302 3.9 20.0 1.0 OD1 G:ASP144 4.1 49.0 1.0 O3G G:ATP302 4.3 20.0 1.0 CG G:ASP144 4.3 49.0 1.0 NH2 F:ARG189 4.8 49.0 1.0 O3A G:ATP302 4.8 20.0 1.0 C G:LYS66 4.9 49.0 1.0 O1B G:ATP302 4.9 20.0 1.0 C G:THR67 4.9 49.0 1.0

Magnesium binding site 8 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg301 b:20.0 occ:1.00 OG1 H:THR67 1.6 49.0 1.0 O3G H:ATP302 1.6 20.0 1.0 O2B H:ATP302 2.6 20.0 1.0 CB H:THR67 2.8 49.0 1.0 PG H:ATP302 3.0 20.0 1.0 O3B H:ATP302 3.6 20.0 1.0 PB H:ATP302 3.7 20.0 1.0 OD2 H:ASP144 3.8 49.0 1.0 CG2 H:THR67 3.8 49.0 1.0 CA H:THR67 3.8 49.0 1.0 N H:THR67 3.8 49.0 1.0 O2G H:ATP302 3.8 20.0 1.0 OD1 H:ASP144 4.0 49.0 1.0 O1G H:ATP302 4.0 20.0 1.0 O1A H:ATP302 4.1 20.0 1.0 CG H:ASP144 4.3 49.0 1.0 OE2 G:GLU162 4.5 50.0 1.0 O1B H:ATP302 4.7 20.0 1.0 O3A H:ATP302 4.8 20.0 1.0

Magnesium binding site 9 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg301 b:20.0 occ:1.00 O2G I:ATP302 1.9 20.0 1.0 OG1 I:THR67 1.9 49.0 1.0 O2B I:ATP302 2.7 20.0 1.0 OD1 I:ASP144 3.0 49.0 1.0 CB I:THR67 3.1 49.0 1.0 PG I:ATP302 3.1 20.0 1.0 OD2 I:ASP144 3.3 49.0 1.0 O3B I:ATP302 3.5 20.0 1.0 CG I:ASP144 3.6 49.0 1.0 O1G I:ATP302 3.7 20.0 1.0 PB I:ATP302 3.7 20.0 1.0 N I:THR67 4.0 49.0 1.0 CA I:THR67 4.1 49.0 1.0 CG2 I:THR67 4.1 49.0 1.0 O3G I:ATP302 4.4 20.0 1.0 O1B I:ATP302 4.5 20.0 1.0 CG I:GLU145 4.8 49.0 1.0 O1A I:ATP302 4.8 20.0 1.0 O3A I:ATP302 4.9 20.0 1.0

Magnesium binding site 10 out of 14 in the V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of V-K Cast Transpososome From Scytonema Hofmanni, Major Configuration within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg301 b:20.0 occ:1.00 O1G J:ATP302 1.5 20.0 1.0 OG1 J:THR67 2.0 49.0 1.0 O2B J:ATP302 2.9 20.0 1.0 PG J:ATP302 2.9 20.0 1.0 CB J:THR67 3.0 49.0 1.0 O3B J:ATP302 3.4 20.0 1.0 PB J:ATP302 3.7 20.0 1.0 O2G J:ATP302 3.8 20.0 1.0 OD1 J:ASP144 3.9 49.0 1.0 O3G J:ATP302 3.9 20.0 1.0 CG2 J:THR67 4.0 49.0 1.0 N J:THR67 4.0 49.0 1.0 CA J:THR67 4.0 49.0 1.0 OD2 J:ASP144 4.1 49.0 1.0 CG J:ASP144 4.4 49.0 1.0 NH2 I:ARG189 4.5 49.0 1.0 O1B J:ATP302 4.6 20.0 1.0 O2A J:ATP302 4.6 20.0 1.0 OE1 I:GLU162 4.8 49.0 1.0 O3A J:ATP302 4.9 20.0 1.0

J.U.Park, A.W.Tsai, A.N.Rizo, V.H.Truong, T.X.Wellner, R.D.Schargel, E.H.Kellogg. Structures of the Holo Crispr Rna-Guided Transposon Integration Complex. Nature 2022.
ISSN: ESSN 1476-4687
PubMed: 36442503
DOI: 10.1038/S41586-022-05573-5