Magnesium in PDB 8ea4: V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration

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>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Magnesium atom in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration (pdb code 8ea4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 15 binding sites of Magnesium where determined in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration, PDB code: 8ea4:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:20.0 occ:1.00 OG1 A:THR67 1.9 49.0 1.0 O1G A:ATP302 2.3 20.0 1.0 O2B A:ATP302 2.9 20.0 1.0 O1A A:ATP302 3.1 20.0 1.0 CB A:THR67 3.2 49.0 1.0 OD2 A:ASP144 3.6 49.0 1.0 PG A:ATP302 3.6 20.0 1.0 OD1 A:ASP144 3.8 49.0 1.0 O3B A:ATP302 3.8 20.0 1.0 PB A:ATP302 3.9 20.0 1.0 CG2 A:THR67 4.0 49.0 1.0 CG A:ASP144 4.1 49.0 1.0 PA A:ATP302 4.2 20.0 1.0 O2G A:ATP302 4.3 20.0 1.0 CA A:THR67 4.3 49.0 1.0 O3A A:ATP302 4.4 20.0 1.0 N A:THR67 4.4 49.0 1.0 O2A A:ATP302 4.7 20.0 1.0 CG A:GLU145 4.7 49.0 1.0 O3G A:ATP302 4.8 20.0 1.0 OE2 A:GLU145 4.9 49.0 1.0

Magnesium binding site 2 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:20.0 occ:1.00 OG1 B:THR67 2.1 49.0 1.0 O3B B:ATP302 2.3 20.0 1.0 O2B B:ATP302 2.3 20.0 1.0 O1G B:ATP302 2.3 20.0 1.0 CB B:THR67 2.7 49.0 1.0 PG B:ATP302 2.8 20.0 1.0 PB B:ATP302 2.8 20.0 1.0 O1A B:ATP302 3.1 20.0 1.0 O2G B:ATP302 3.4 20.0 1.0 O3A B:ATP302 3.5 20.0 1.0 N B:THR67 3.6 49.0 1.0 CA B:THR67 3.7 49.0 1.0 CG2 B:THR67 3.8 49.0 1.0 NH2 A:ARG189 3.8 49.0 1.0 PA B:ATP302 3.9 20.0 1.0 O3G B:ATP302 4.1 20.0 1.0 O1B B:ATP302 4.1 20.0 1.0 NH2 B:ARG63 4.7 49.0 1.0 OD2 B:ASP144 4.7 49.0 1.0 OD1 B:ASP144 4.7 49.0 1.0 O2A B:ATP302 4.8 20.0 1.0 C B:LYS66 4.8 49.0 1.0 C B:THR67 4.9 49.0 1.0 CZ A:ARG189 5.0 49.0 1.0

Magnesium binding site 3 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:20.0 occ:1.00 OG1 C:THR67 1.6 49.0 1.0 O3G C:ATP302 2.4 20.0 1.0 CB C:THR67 2.9 49.0 1.0 OD2 C:ASP144 2.9 49.0 1.0 O2B C:ATP302 3.6 20.0 1.0 OD1 C:ASP144 3.6 49.0 1.0 CG2 C:THR67 3.6 49.0 1.0 CG C:ASP144 3.6 49.0 1.0 CA C:THR67 3.9 49.0 1.0 PG C:ATP302 3.9 20.0 1.0 N C:THR67 4.1 49.0 1.0 O3B C:ATP302 4.3 20.0 1.0 O1A C:ATP302 4.3 20.0 1.0 PB C:ATP302 4.6 20.0 1.0 O2G C:ATP302 4.7 20.0 1.0 O1G C:ATP302 4.8 20.0 1.0 OH C:TYR93 4.8 49.0 1.0

Magnesium binding site 4 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:20.0 occ:1.00 OG1 D:THR67 1.8 49.0 1.0 O1G D:ATP302 2.4 20.0 1.0 O2B D:ATP302 2.5 20.0 1.0 CB D:THR67 3.1 49.0 1.0 OD2 D:ASP144 3.5 49.0 1.0 PG D:ATP302 3.6 20.0 1.0 PB D:ATP302 3.7 20.0 1.0 O3B D:ATP302 3.8 20.0 1.0 OD1 D:ASP144 3.8 49.0 1.0 CG2 D:THR67 3.9 49.0 1.0 N D:THR67 4.0 49.0 1.0 CG D:ASP144 4.0 49.0 1.0 O2G D:ATP302 4.0 20.0 1.0 CA D:THR67 4.1 49.0 1.0 O1A D:ATP302 4.2 20.0 1.0 NH2 C:ARG189 4.6 49.0 1.0 O3A D:ATP302 4.8 20.0 1.0 O1B D:ATP302 4.8 20.0 1.0 O3G D:ATP302 4.9 20.0 1.0

Magnesium binding site 5 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg301 b:20.0 occ:1.00 OG1 E:THR67 1.6 49.0 1.0 O1G E:ATP302 2.4 20.0 1.0 O2B E:ATP302 2.4 20.0 1.0 CB E:THR67 3.0 49.0 1.0 OD2 E:ASP144 3.5 49.0 1.0 CG2 E:THR67 3.6 49.0 1.0 PG E:ATP302 3.7 20.0 1.0 PB E:ATP302 3.7 20.0 1.0 O3B E:ATP302 3.8 20.0 1.0 OD1 E:ASP144 3.9 49.0 1.0 CA E:THR67 3.9 49.0 1.0 N E:THR67 4.0 49.0 1.0 CG E:ASP144 4.1 49.0 1.0 O2G E:ATP302 4.4 20.0 1.0 O3A E:ATP302 4.7 20.0 1.0 O1B E:ATP302 4.8 20.0 1.0 O3G E:ATP302 4.9 20.0 1.0 O1A E:ATP302 4.9 20.0 1.0

Magnesium binding site 6 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg301 b:20.0 occ:1.00 OG1 F:THR67 1.4 49.0 1.0 O1G F:ATP302 2.4 20.0 1.0 O2B F:ATP302 2.7 20.0 1.0 CB F:THR67 2.8 49.0 1.0 PG F:ATP302 3.4 20.0 1.0 O3B F:ATP302 3.5 20.0 1.0 CG2 F:THR67 3.6 49.0 1.0 O1A F:ATP302 3.7 20.0 1.0 PB F:ATP302 3.7 20.0 1.0 OD2 F:ASP144 3.7 49.0 1.0 N F:THR67 3.7 49.0 1.0 CA F:THR67 3.7 49.0 1.0 O2G F:ATP302 3.7 20.0 1.0 OD1 F:ASP144 4.0 49.0 1.0 CG F:ASP144 4.3 49.0 1.0 O3A F:ATP302 4.5 20.0 1.0 PA F:ATP302 4.7 20.0 1.0 O3G F:ATP302 4.7 20.0 1.0 C F:LYS66 4.7 49.0 1.0 O1B F:ATP302 4.9 20.0 1.0

Magnesium binding site 7 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg301 b:20.0 occ:1.00 OG1 G:THR67 1.4 49.0 1.0 O1G G:ATP302 2.2 20.0 1.0 O3B G:ATP302 2.7 20.0 1.0 CB G:THR67 2.8 49.0 1.0 O2B G:ATP302 2.9 20.0 1.0 PG G:ATP302 3.0 20.0 1.0 PB G:ATP302 3.4 20.0 1.0 CG2 G:THR67 3.6 49.0 1.0 O2G G:ATP302 3.6 20.0 1.0 OD2 G:ASP144 3.7 49.0 1.0 N G:THR67 3.7 49.0 1.0 CA G:THR67 3.7 49.0 1.0 OD1 G:ASP144 4.0 49.0 1.0 O3A G:ATP302 4.2 20.0 1.0 O3G G:ATP302 4.3 20.0 1.0 CG G:ASP144 4.3 49.0 1.0 O1B G:ATP302 4.6 20.0 1.0 C G:LYS66 4.7 49.0 1.0 NH2 F:ARG189 4.9 49.0 1.0

Magnesium binding site 8 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg301 b:20.0 occ:1.00 OG1 H:THR67 1.7 49.0 1.0 O1G H:ATP302 2.5 20.0 1.0 O3B H:ATP302 2.6 20.0 1.0 CB H:THR67 2.6 49.0 1.0 PG H:ATP302 3.1 20.0 1.0 CG2 H:THR67 3.2 49.0 1.0 O1A H:ATP302 3.4 20.0 1.0 PB H:ATP302 3.8 20.0 1.0 OD2 H:ASP144 3.8 49.0 1.0 O3A H:ATP302 3.9 20.0 1.0 CA H:THR67 3.9 49.0 1.0 O3G H:ATP302 3.9 20.0 1.0 O2B H:ATP302 4.0 20.0 1.0 N H:THR67 4.2 49.0 1.0 OE1 G:GLU162 4.3 49.0 1.0 PA H:ATP302 4.3 20.0 1.0 O2G H:ATP302 4.3 20.0 1.0 OD1 H:ASP144 4.6 49.0 1.0 CG H:ASP144 4.6 49.0 1.0 NH2 G:ARG189 4.7 49.0 1.0 OE2 G:GLU162 5.0 49.0 1.0 O5' H:ATP302 5.0 20.0 1.0 O1B H:ATP302 5.0 20.0 1.0

Magnesium binding site 9 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg301 b:20.0 occ:1.00 OG1 I:THR67 1.9 49.0 1.0 OD2 I:ASP144 2.0 49.0 1.0 OD1 I:ASP144 2.1 49.0 1.0 O3G I:ATP302 2.4 20.0 1.0 CG I:ASP144 2.4 49.0 1.0 CB I:THR67 3.3 49.0 1.0 O2B I:ATP302 3.6 20.0 1.0 PG I:ATP302 3.7 20.0 1.0 CG2 I:THR67 3.9 49.0 1.0 CB I:ASP144 3.9 49.0 1.0 O3B I:ATP302 4.1 20.0 1.0 CA I:THR67 4.1 49.0 1.0 CG I:GLU145 4.2 49.0 1.0 O2G I:ATP302 4.3 20.0 1.0 N I:THR67 4.4 49.0 1.0 PB I:ATP302 4.5 20.0 1.0 N I:GLU145 4.7 49.0 1.0 OE2 I:GLU145 4.8 49.0 1.0 O1G I:ATP302 4.9 20.0 1.0 CA I:ASP144 4.9 49.0 1.0 CD I:ARG95 4.9 49.0 1.0 CD I:GLU145 5.0 49.0 1.0

Magnesium binding site 10 out of 15 in the V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of V-K Cast Transpososome From Scytonema Hofmanni, Minor Configuration within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg301 b:20.0 occ:1.00 OG1 J:THR67 2.0 49.0 1.0 O2G J:ATP302 2.4 20.0 1.0 O2B J:ATP302 2.5 20.0 1.0 OD2 J:ASP144 2.7 49.0 1.0 CB J:THR67 3.1 49.0 1.0 PG J:ATP302 3.4 20.0 1.0 CG J:ASP144 3.6 49.0 1.0 O3B J:ATP302 3.6 20.0 1.0 PB J:ATP302 3.6 20.0 1.0 OD1 J:ASP144 3.7 49.0 1.0 N J:THR67 3.8 49.0 1.0 O1G J:ATP302 3.8 20.0 1.0 CA J:THR67 3.9 49.0 1.0 CG2 J:THR67 4.2 49.0 1.0 O1B J:ATP302 4.6 20.0 1.0 O3G J:ATP302 4.8 20.0 1.0 O3A J:ATP302 4.8 20.0 1.0 C J:LYS66 4.8 49.0 1.0 CB J:LYS66 4.9 49.0 1.0 CG J:GLU145 4.9 49.0 1.0 O2A J:ATP302 4.9 20.0 1.0

J.U.Park, A.W.Tsai, A.N.Rizo, V.H.Truong, T.X.Wellner, R.D.Schargel, E.H.Kellogg. Structures of the Holo Crispr Rna-Guided Transposon Integration Complex. Nature 2022.
ISSN: ESSN 1476-4687
PubMed: 36442503
DOI: 10.1038/S41586-022-05573-5