Magnesium in PDB 8ed6: 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Complex with Ligand Orientation II

The structure of 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Complex with Ligand Orientation II, PDB code: 8ed6 was solved by E.N.Ogbonna, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.19 / 1.63
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.792, 40.069, 65.554, 90, 90, 90
R / Rfree (%)	18.3 / 22.2

The binding sites of Magnesium atom in the 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Complex with Ligand Orientation II (pdb code 8ed6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Complex with Ligand Orientation II, PDB code: 8ed6:

Magnesium binding site 1 out of 1 in the 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Complex with Ligand Orientation II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Complex with Ligand Orientation II within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:21.2 occ:1.00 O B:HOH214 2.1 20.6 1.0 O C:HOH217 2.1 22.3 1.0 O B:HOH223 2.1 21.9 1.0 H5 B:DC1 4.0 21.9 1.0 O C:HOH219 4.1 26.7 1.0 O6 C:DG22 4.2 20.8 1.0 O B:HOH233 4.2 29.3 1.0 O C:HOH229 4.3 21.5 1.0 O B:HOH255 4.4 28.0 1.0 O6 B:DG2 4.4 19.3 1.0 C5 B:DC1 4.4 18.3 1.0 N7 B:DG2 4.4 18.6 1.0 H42 B:DC3 4.8 26.0 1.0 H6 B:DC1 4.8 23.4 1.0 C6 B:DC1 4.9 19.5 1.0 H41 B:DC1 4.9 28.5 1.0 H41 B:DC3 5.0 26.0 1.0

E.N.Ogbonna, A.Paul, A.Faharat, J.R.Terrell, V.Ogbonna, D.W.Boykin, W.D.Wilson. X-Ray Structure Characterization of the Selective Recognition of at Base Pair Sequences Acs Bio Med Chem Au 2023.
ISSN: ESSN 2694-2437