Magnesium in PDB 8enc: Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex
(pdb code 8enc). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex, PDB code: 8enc:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 8enc
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Magnesium Binding Sites List in 8enc
Magnesium binding site 1 out
of 5 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:84.0
occ:1.00
|
O1B
|
B:ADP401
|
2.0
|
89.0
|
1.0
|
O3B
|
B:ADP401
|
2.6
|
89.0
|
1.0
|
PB
|
B:ADP401
|
2.7
|
89.0
|
1.0
|
OE1
|
B:GLN137
|
3.2
|
91.4
|
1.0
|
O3A
|
B:ADP401
|
3.4
|
89.0
|
1.0
|
CD
|
B:GLN137
|
3.9
|
91.4
|
1.0
|
OD2
|
B:ASP154
|
4.0
|
88.0
|
1.0
|
O2B
|
B:ADP401
|
4.1
|
89.0
|
1.0
|
NE2
|
B:GLN137
|
4.1
|
91.4
|
1.0
|
O1A
|
B:ADP401
|
4.3
|
89.0
|
1.0
|
CA
|
B:GLY156
|
4.4
|
88.0
|
1.0
|
CA
|
B:GLY13
|
4.4
|
94.8
|
1.0
|
PA
|
B:ADP401
|
4.5
|
89.0
|
1.0
|
OD1
|
B:ASP11
|
4.7
|
93.8
|
1.0
|
CG
|
B:ASP154
|
4.9
|
88.0
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 8enc
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Magnesium Binding Sites List in 8enc
Magnesium binding site 2 out
of 5 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:83.5
occ:1.00
|
O1B
|
C:ADP401
|
1.9
|
90.1
|
1.0
|
O3A
|
C:ADP401
|
2.9
|
90.1
|
1.0
|
PB
|
C:ADP401
|
2.9
|
90.1
|
1.0
|
OE1
|
C:GLN137
|
3.6
|
88.2
|
1.0
|
O3B
|
C:ADP401
|
3.7
|
90.1
|
1.0
|
OD1
|
C:ASP154
|
4.0
|
87.9
|
1.0
|
O2B
|
C:ADP401
|
4.1
|
90.1
|
1.0
|
CD
|
C:GLN137
|
4.1
|
88.2
|
1.0
|
NE2
|
C:GLN137
|
4.2
|
88.2
|
1.0
|
CA
|
C:GLY156
|
4.2
|
86.4
|
1.0
|
PA
|
C:ADP401
|
4.4
|
90.1
|
1.0
|
OD2
|
C:ASP154
|
4.6
|
87.9
|
1.0
|
CG
|
C:ASP154
|
4.7
|
87.9
|
1.0
|
O1A
|
C:ADP401
|
4.7
|
90.1
|
1.0
|
CA
|
C:GLY13
|
4.7
|
92.3
|
1.0
|
N
|
C:GLY156
|
4.9
|
86.4
|
1.0
|
CG2
|
C:VAL339
|
5.0
|
85.3
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 8enc
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Magnesium Binding Sites List in 8enc
Magnesium binding site 3 out
of 5 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:82.6
occ:1.00
|
O1B
|
D:ADP401
|
2.4
|
87.6
|
1.0
|
O3B
|
D:ADP401
|
2.5
|
87.6
|
1.0
|
PB
|
D:ADP401
|
2.8
|
87.6
|
1.0
|
OE1
|
D:GLN137
|
3.3
|
91.2
|
1.0
|
O3A
|
D:ADP401
|
3.4
|
87.6
|
1.0
|
NE2
|
D:GLN137
|
3.8
|
91.2
|
1.0
|
CD
|
D:GLN137
|
3.8
|
91.2
|
1.0
|
CA
|
D:GLY13
|
4.2
|
93.2
|
1.0
|
O2B
|
D:ADP401
|
4.3
|
87.6
|
1.0
|
OD1
|
D:ASP154
|
4.3
|
87.2
|
1.0
|
CA
|
D:GLY156
|
4.4
|
86.6
|
1.0
|
OD1
|
D:ASP11
|
4.4
|
94.3
|
1.0
|
O1A
|
D:ADP401
|
4.5
|
87.6
|
1.0
|
PA
|
D:ADP401
|
4.6
|
87.6
|
1.0
|
OD2
|
D:ASP11
|
5.0
|
94.3
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 8enc
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Magnesium Binding Sites List in 8enc
Magnesium binding site 4 out
of 5 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:93.8
occ:1.00
|
O3B
|
E:ADP401
|
2.2
|
87.3
|
1.0
|
O1B
|
E:ADP401
|
2.6
|
87.3
|
1.0
|
PB
|
E:ADP401
|
2.7
|
87.3
|
1.0
|
O3A
|
E:ADP401
|
3.1
|
87.3
|
1.0
|
OE1
|
E:GLN137
|
3.8
|
88.5
|
1.0
|
O1A
|
E:ADP401
|
3.9
|
87.3
|
1.0
|
CA
|
E:GLY156
|
4.1
|
84.3
|
1.0
|
PA
|
E:ADP401
|
4.1
|
87.3
|
1.0
|
OD1
|
E:ASP154
|
4.2
|
85.6
|
1.0
|
O2B
|
E:ADP401
|
4.2
|
87.3
|
1.0
|
CD
|
E:GLN137
|
4.4
|
88.5
|
1.0
|
NE2
|
E:GLN137
|
4.5
|
88.5
|
1.0
|
CA
|
E:GLY13
|
4.6
|
91.6
|
1.0
|
OD1
|
E:ASP11
|
4.8
|
92.6
|
1.0
|
N
|
E:GLY156
|
4.8
|
84.3
|
1.0
|
O2A
|
E:ADP401
|
4.9
|
87.3
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 8enc
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Magnesium Binding Sites List in 8enc
Magnesium binding site 5 out
of 5 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Loop 4 7G Mutant Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg402
b:89.2
occ:1.00
|
O1B
|
F:ADP401
|
2.0
|
90.6
|
1.0
|
O3B
|
F:ADP401
|
2.5
|
90.6
|
1.0
|
PB
|
F:ADP401
|
2.7
|
90.6
|
1.0
|
OE1
|
F:GLN137
|
3.4
|
91.2
|
1.0
|
O3A
|
F:ADP401
|
3.6
|
90.6
|
1.0
|
NE2
|
F:GLN137
|
3.7
|
91.2
|
1.0
|
CD
|
F:GLN137
|
3.8
|
91.2
|
1.0
|
OD1
|
F:ASP154
|
3.9
|
88.5
|
1.0
|
O2B
|
F:ADP401
|
3.9
|
90.6
|
1.0
|
CA
|
F:GLY13
|
4.4
|
93.0
|
1.0
|
CA
|
F:GLY156
|
4.7
|
86.6
|
1.0
|
OD1
|
F:ASP11
|
4.7
|
95.0
|
1.0
|
O1A
|
F:ADP401
|
4.7
|
90.6
|
1.0
|
PA
|
F:ADP401
|
4.8
|
90.6
|
1.0
|
CG
|
F:ASP154
|
4.9
|
88.5
|
1.0
|
CG2
|
F:VAL339
|
4.9
|
89.5
|
1.0
|
CG
|
F:GLN137
|
4.9
|
91.2
|
1.0
|
OD2
|
F:ASP154
|
4.9
|
88.5
|
1.0
|
|
Reference:
M.H.Doran,
M.J.Rynkiewicz,
E.Pavadai,
S.M.L.Bodt,
D.Rasicci,
J.R.Moore,
C.M.Yengo,
E.Bullitt,
W.Lehman.
Myosin Loop-4 Is Critical For Optimal Tropomyosin Repositioning on Actin During Muscle Activation and Relaxation. J.Gen.Physiol. V. 155 2023.
ISSN: ESSN 1540-7748
PubMed: 36459134
DOI: 10.1085/JGP.202213274
Page generated: Fri Oct 4 01:18:10 2024
|