Magnesium in PDB 8f8p: Cryo-Em Structure of F-Actin in the Adp State

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin in the Adp State (pdb code 8f8p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin in the Adp State, PDB code: 8f8p:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of F-Actin in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin in the Adp State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:28.2 occ:1.00 O1B A:ADP401 2.6 34.0 1.0 O1A A:ADP401 3.6 36.9 1.0 OE1 A:GLN137 3.7 42.3 1.0 OD2 A:ASP154 3.8 44.8 1.0 PB A:ADP401 3.9 31.1 1.0 OD2 A:ASP11 4.1 44.6 1.0 O3B A:ADP401 4.1 36.3 1.0 CD A:GLN137 4.3 37.1 1.0 NE2 A:GLN137 4.5 32.3 1.0 OD1 A:ASP11 4.6 41.1 1.0 O3A A:ADP401 4.6 34.2 1.0 OD1 A:ASP154 4.6 42.3 1.0 PA A:ADP401 4.7 17.1 1.0 NZ A:LYS18 4.7 34.2 1.0 CG A:ASP154 4.7 43.5 1.0 CA A:GLY13 4.7 34.1 1.0 CG A:ASP11 4.8 41.0 1.0 CA A:GLY156 4.8 30.2 1.0 CG2 A:VAL339 4.9 27.6 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of F-Actin in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin in the Adp State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:28.2 occ:1.00 O1B B:ADP401 2.6 34.0 1.0 O1A B:ADP401 3.6 36.9 1.0 OE1 B:GLN137 3.7 42.3 1.0 OD2 B:ASP154 3.8 44.8 1.0 PB B:ADP401 3.9 31.1 1.0 OD2 B:ASP11 4.1 44.6 1.0 O3B B:ADP401 4.1 36.3 1.0 CD B:GLN137 4.3 37.1 1.0 NE2 B:GLN137 4.5 32.3 1.0 OD1 B:ASP11 4.6 41.1 1.0 O3A B:ADP401 4.6 34.2 1.0 OD1 B:ASP154 4.6 42.3 1.0 PA B:ADP401 4.7 17.1 1.0 NZ B:LYS18 4.7 34.2 1.0 CG B:ASP154 4.7 43.5 1.0 CA B:GLY13 4.7 34.1 1.0 CG B:ASP11 4.8 41.0 1.0 CA B:GLY156 4.8 30.2 1.0 CG2 B:VAL339 4.9 27.6 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of F-Actin in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin in the Adp State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:28.2 occ:1.00 O1B C:ADP401 2.6 34.0 1.0 O1A C:ADP401 3.6 36.9 1.0 OE1 C:GLN137 3.7 42.3 1.0 OD2 C:ASP154 3.8 44.8 1.0 PB C:ADP401 3.9 31.1 1.0 OD2 C:ASP11 4.1 44.6 1.0 O3B C:ADP401 4.1 36.3 1.0 CD C:GLN137 4.3 37.1 1.0 NE2 C:GLN137 4.5 32.3 1.0 OD1 C:ASP11 4.6 41.1 1.0 O3A C:ADP401 4.6 34.2 1.0 OD1 C:ASP154 4.6 42.3 1.0 PA C:ADP401 4.7 17.1 1.0 NZ C:LYS18 4.7 34.2 1.0 CG C:ASP154 4.7 43.5 1.0 CA C:GLY13 4.7 34.1 1.0 CG C:ASP11 4.8 41.0 1.0 CA C:GLY156 4.8 30.2 1.0 CG2 C:VAL339 4.9 27.6 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of F-Actin in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin in the Adp State within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:28.2 occ:1.00 O1B D:ADP401 2.6 34.0 1.0 O1A D:ADP401 3.6 36.9 1.0 OE1 D:GLN137 3.7 42.3 1.0 OD2 D:ASP154 3.8 44.8 1.0 PB D:ADP401 3.9 31.1 1.0 OD2 D:ASP11 4.1 44.6 1.0 O3B D:ADP401 4.1 36.3 1.0 CD D:GLN137 4.3 37.1 1.0 NE2 D:GLN137 4.5 32.3 1.0 OD1 D:ASP11 4.6 41.1 1.0 O3A D:ADP401 4.6 34.2 1.0 OD1 D:ASP154 4.6 42.3 1.0 PA D:ADP401 4.7 17.1 1.0 NZ D:LYS18 4.7 34.2 1.0 CG D:ASP154 4.7 43.5 1.0 CA D:GLY13 4.7 34.1 1.0 CG D:ASP11 4.8 41.0 1.0 CA D:GLY156 4.8 30.2 1.0 CG2 D:VAL339 4.9 27.6 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of F-Actin in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin in the Adp State within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:28.2 occ:1.00 O1B E:ADP401 2.6 34.0 1.0 O1A E:ADP401 3.6 36.9 1.0 OE1 E:GLN137 3.7 42.3 1.0 OD2 E:ASP154 3.8 44.8 1.0 PB E:ADP401 3.9 31.1 1.0 OD2 E:ASP11 4.1 44.6 1.0 O3B E:ADP401 4.1 36.3 1.0 CD E:GLN137 4.3 37.1 1.0 NE2 E:GLN137 4.5 32.3 1.0 OD1 E:ASP11 4.6 41.1 1.0 O3A E:ADP401 4.6 34.2 1.0 OD1 E:ASP154 4.6 42.3 1.0 PA E:ADP401 4.7 17.1 1.0 NZ E:LYS18 4.7 34.2 1.0 CG E:ASP154 4.7 43.5 1.0 CA E:GLY13 4.7 34.1 1.0 CG E:ASP11 4.8 41.0 1.0 CA E:GLY156 4.8 30.2 1.0 CG2 E:VAL339 4.9 27.6 1.0

P.J.Carman, K.R.Barrie, G.Rebowski, R.Dominguez. Structures of the Free and Capped Ends of the Actin Filament. Science G6812 2023.
ISSN: ESSN 1095-9203
PubMed: 37228182
DOI: 10.1126/SCIENCE.ADG6812